Gene: AT4G02400

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G02400
  • Transcript Identifier AT4G02400.1
  • Gene Type Coding gene
  • Location Chr4 : 1054243-1057884 : positive

Gene Family Information

  • ID HOM05D000880
  • #Genes/#Species 677/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G02400.1
  • uniprot F4JHI1

Descriptions

  • Description U3 ribonucleoprotein (Utp) family protein
  • Computational description U3 ribonucleoprotein (Utp) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED IN: small-subunit processome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small-subunit processome, Utp14 (InterPro:IPR006709); BEST Arabidopsis thaliana protein match is: U3 ribonucleoprotein (Utp) family protein (TAIR:AT5G08600.2); Has 7468 Blast hits to 4514 proteins in 366 species: Archae - 14; Bacteria - 554; Metazoa - 2650; Fungi - 816; Plants - 392; Viruses - 146; Other Eukaryotes - 2896 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006364
IEA
Gene OntologyrRNA processing
GO:0006364
IEA
InterProrRNA processing

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003674
ND
Gene Ontologymolecular_function

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus
GO:0005730
IEA
GOA Databasenucleolus
GO:0005730
IBA
Gene Ontologynucleolus1
GO:0032040
IEA
GOA Databasesmall-subunit processome
GO:0032040
IBA
Gene Ontologysmall-subunit processome1
GO:0032040
IEA
InterProsmall-subunit processome

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR006709 Small-subunit processome, Utp14
Mapman id Description
17.1.3.2.1.11 Protein biosynthesis.ribosome biogenesis.small ribosomal subunit (SSU).SSU processome.pre-40S ribosomal subunit nuclear assembly.assembly factor (UTP14)