Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G02400 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 0.0e+00 1583.5 856 100.0
AL6G50720 Arabidopsis lyrata HOM05D000880 ORTHO05D004760 0.0e+00 1463.4 856 92.2
Carub.0006s3476 Capsella rubella HOM05D000880 ORTHO05D004760 0.0e+00 1374.0 846 88.5
Sp6g02280 Schrenkiella parvula HOM05D000880 ORTHO05D004760 0.0e+00 1277.7 856 81.5
CARHR250590 Cardamine hirsuta HOM05D000880 ORTHO05D004760 0.0e+00 1253.4 860 80.6
Aa31LG5G2040 Aethionema arabicum HOM05D000880 ORTHO05D004760 0.0e+00 1233.4 868 78.7
Thhalv10028424m.g Eutrema salsugineum HOM05D000880 ORTHO05D004760 0.0e+00 1214.1 845 78.1
BcaC03g16120 Brassica carinata HOM05D000880 ORTHO05D004760 0.0e+00 1203.0 857 78.1
BolC2t09905H Brassica oleracea HOM05D000880 ORTHO05D004760 0.0e+00 1186.8 884 76.1
BcaB05g23626 Brassica carinata HOM05D000880 ORTHO05D004760 0.0e+00 1176.0 856 76.9
A02p24660 Brassica napus HOM05D000880 ORTHO05D004760 0.0e+00 1172.5 863 75.9
C02p38920 Brassica napus HOM05D000880 ORTHO05D004760 0.0e+00 1172.5 872 76.4
BraA02t07457Z Brassica rapa HOM05D000880 ORTHO05D004760 0.0e+00 1129.4 887 72.9
Thhalv10015339m.g Eutrema salsugineum HOM05D000880 ORTHO05D004760 3.6e-304 1048.1 818 73.6
Carub.0006s0757 Capsella rubella HOM05D000880 ORTHO05D004760 8.9e-303 1043.5 845 70.3
AL6G19330 Arabidopsis lyrata HOM05D000880 ORTHO05D004760 7.8e-299 1030.4 840 69.8
AT5G08600 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 3.3e-297 1025.0 855 70.4
THA.LOC104801276 Tarenaya hassleriana HOM05D000880 ORTHO05D004760 6.5e-277 957.6 860 64.2
A09p01860 Brassica napus HOM05D000880 ORTHO05D004760 1.1e-276 956.8 853 65.9
BcaNung04048 Brassica carinata HOM05D000880 ORTHO05D004760 2.1e-267 926.0 860 64.7
Dinv33059 Davidia involucrata HOM05D000880 ORTHO05D004760 1.0e-234 817.4 898 54.2
Cpa.g.sc229.11 Carica papaya HOM05D000880 ORTHO05D004760 3.4e-233 812.4 923 54.5
Thecc.01G301500 Theobroma cacao HOM05D000880 ORTHO05D004760 5.0e-229 798.5 892 53.7
Duzib138G0681 Durio zibethinus HOM05D000880 ORTHO05D004760 8.5e-229 797.7 877 54.0
Oeu000551.1 Olea europaea HOM05D000880 ORTHO05D004760 4.2e-228 795.4 869 54.2
Manes.01G219900 Manihot esculenta HOM05D000880 ORTHO05D004760 1.2e-227 793.9 892 53.4
Ciclev10027776m.g Citrus clementina HOM05D000880 ORTHO05D004760 2.7e-227 792.7 884 53.7
GSVIVG01028028001 Vitis vinifera HOM05D000880 ORTHO05D004760 3.0e-226 789.3 881 54.3
Eucgr.K03490 Eucalyptus grandis HOM05D000880 ORTHO05D004760 1.2e-225 787.3 889 52.6
Gorai.008G144800 Gossypium raimondii HOM05D000880 ORTHO05D004760 1.3e-224 783.9 881 55.6
Gohir.D12G133800 Gossypium hirsutum HOM05D000880 ORTHO05D004760 4.9e-224 781.9 883 55.4
Gohir.A12G130000 Gossypium hirsutum HOM05D000880 ORTHO05D004760 1.1e-223 780.8 869 54.7
QL12p028379 Quercus lobata HOM05D000880 ORTHO05D004760 1.2e-222 777.3 898 53.7
Lj2A1196T50 Lonicera japonica HOM05D000880 ORTHO05D004760 4.5e-222 775.4 885 52.4
CSS0046847 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D004760 9.5e-220 767.7 890 52.2
Nitab4.5_0002995g0010 Nicotiana tabacum HOM05D000880 ORTHO05D004760 6.1e-219 765.0 894 52.2
Cc01_g20920 Coffea canephora HOM05D000880 ORTHO05D004760 1.0e-218 764.2 884 54.0
CiPaw.07G109900 Carya illinoinensis HOM05D000880 ORTHO05D004760 1.8e-218 763.5 886 53.3
CANSAT25G3354 Cannabis sativa HOM05D000880 ORTHO05D004760 8.3e-216 754.6 871 53.4
Cfa005904 Carpinus fangiana HOM05D000880 ORTHO05D004760 8.3e-216 754.6 842 54.5
Haze_04946 Corylus avellana HOM05D000880 ORTHO05D004760 8.3e-216 754.6 828 54.3
Hma1.2p1_0494F.1_g165220 Hydrangea macrophylla HOM05D000880 ORTHO05D004760 8.3e-216 754.6 896 51.5
PGSC0003DMG400023908 Solanum tuberosum HOM05D000880 ORTHO05D004760 8.3e-216 754.6 858 53.4
Solyc09g005760.3 Solanum lycopersicum HOM05D000880 ORTHO05D004760 3.2e-215 752.7 879 53.5
Atru.chr3.2809 Acer truncatum HOM05D000880 ORTHO05D004760 7.0e-215 751.5 879 52.6
BcaB01g02051 Brassica carinata HOM05D000880 ORTHO05D004760 7.0e-215 751.5 743 61.8
TAR362G0476 Trochodendron aralioides HOM05D000880 ORTHO05D004760 7.0e-215 751.5 900 51.1
Sopen09g001650 Solanum pennellii HOM05D000880 ORTHO05D004760 3.5e-214 749.2 898 52.1
Migut.C01322 Erythranthe guttata HOM05D000880 ORTHO05D004760 1.0e-213 747.7 891 52.1
CSS0022271 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D004760 2.3e-213 746.5 863 52.3
SalBow7G4572 Salvia bowleyana HOM05D000880 ORTHO05D004760 5.0e-213 745.3 897 51.1
CAN.G125.1 Capsicum annuum HOM05D000880 ORTHO05D004760 1.1e-212 744.2 871 52.7
CsaV3_7G029310 Cucumis sativus L. HOM05D000880 ORTHO05D004760 1.9e-212 743.4 897 50.3
MELO3C015997.2 Cucumis melo HOM05D000880 ORTHO05D004760 9.5e-212 741.1 905 50.6
PGR044G0963 Punica granatum HOM05D000880 ORTHO05D004760 8.0e-211 738.0 881 50.4
Sed0027832 Sechium edule HOM05D000880 ORTHO05D004760 2.3e-210 736.5 892 50.4
PSO541G5609 Papaver somniferum HOM05D000880 ORTHO05D004760 6.8e-210 734.9 883 51.2
Sed0021307 Sechium edule HOM05D000880 ORTHO05D004760 8.9e-210 734.6 873 50.9
Potri.014G128300 Populus trichocarpa HOM05D000880 ORTHO05D004760 2.0e-209 733.4 886 50.2
Sc04g0008900 Simmondsia chinensis HOM05D000880 ORTHO05D004760 2.6e-209 733.0 881 51.9
SalBow5G3782 Salvia bowleyana HOM05D000880 ORTHO05D004760 4.9e-208 728.8 887 50.7
Nn3g21505 Nelumbo nucifera HOM05D000880 ORTHO05D004760 1.4e-207 727.2 871 52.2
ClCG09G005830 Citrullus lanatus HOM05D000880 ORTHO05D004760 2.4e-207 726.5 894 49.6
PSO675G6830 Papaver somniferum HOM05D000880 ORTHO05D004760 2.4e-207 726.5 891 51.2
TWI14G0456 Tripterygium wilfordii HOM05D000880 ORTHO05D004760 7.0e-207 724.9 914 50.8
Hund25319 Selenicereus undatus HOM05D000880 ORTHO05D004760 1.2e-206 724.2 883 49.9
Ah.07g202710 Amaranthus hybridus HOM05D000880 ORTHO05D004760 3.5e-206 722.6 869 51.8
SGA_v2.0_scaffold24G10608 Striga asiatica HOM05D000880 ORTHO05D004760 1.7e-205 720.3 898 51.7
DCAR_015239 Daucus carota HOM05D000880 ORTHO05D004760 8.6e-205 718.0 808 53.0
Lalb_Chr18g0046951 Lupinus albus HOM05D000880 ORTHO05D004760 1.1e-204 717.6 893 49.7
Lj1g0000333 Lotus japonicus HOM05D000880 ORTHO05D004760 4.7e-203 712.2 894 49.7
COL.COLO4_23336 Corchorus olitorius HOM05D000880 ORTHO05D004760 4.0e-202 709.1 871 50.4
Peaxi162Scf00039g00620 Petunia axillaris HOM05D000880 ORTHO05D004760 5.2e-202 708.8 804 53.2
Glyma.19G211500 Glycine max HOM05D000880 ORTHO05D004760 3.4e-201 706.1 880 51.2
Phvul.001G207700 Phaseolus vulgaris HOM05D000880 ORTHO05D004760 4.9e-200 702.2 890 51.7
Sabra02G0155400 Salix brachista HOM05D000880 ORTHO05D004760 4.9e-200 702.2 874 49.7
AUR62026599 Chenopodium quinoa HOM05D000880 ORTHO05D004760 6.4e-200 701.8 866 50.1
Potri.002G203700 Populus trichocarpa HOM05D000880 ORTHO05D004760 1.4e-199 700.7 893 48.8
arahy.Tifrunner.gnm1.ann1.FAXC2W Arachis hypogaea HOM05D000880 ORTHO05D004760 2.4e-199 699.9 888 50.5
FAN20G0148 Fragaria x ananassa HOM05D000880 ORTHO05D007053 9.2e-199 698.0 880 49.3
MD11G1308900 Malus domestica HOM05D000880 ORTHO05D004760 1.7e-197 693.7 892 50.1
vmacro15153 Vaccinium macrocarpon HOM05D000880 ORTHO05D004760 3.0e-197 693.0 860 49.5
Glyma.03G214900 Glycine max HOM05D000880 ORTHO05D004760 1.1e-196 691.0 891 50.5
arahy.Tifrunner.gnm1.ann1.DCE7TU Arachis hypogaea HOM05D000880 ORTHO05D004760 3.3e-196 689.5 891 49.6
FAN27G2693 Fragaria x ananassa HOM05D000880 ORTHO05D004760 1.8e-194 683.7 878 49.0
Aqoxy2G02932 Aquilegia oxysepala HOM05D000880 ORTHO05D004760 4.0e-194 682.6 888 48.4
EL10Ac9g22871 Beta vulgaris HOM05D000880 ORTHO05D004760 4.0e-194 682.6 814 52.0
RcHm_v2.0_Chr6g0294141 Rosa chinensis HOM05D000880 ORTHO05D004760 4.0e-194 682.6 897 49.1
MD03G1289000 Malus domestica HOM05D000880 ORTHO05D004760 1.1e-191 674.5 900 49.8
FAN24G3174 Fragaria x ananassa HOM05D000880 ORTHO05D007053 6.0e-190 668.7 876 48.5
Psat3g021720 Pisum sativum HOM05D000880 ORTHO05D004760 1.3e-189 667.5 873 48.1
FAN15G1023 Fragaria x ananassa HOM05D000880 ORTHO05D007053 8.6e-189 664.8 883 48.7
Lsat_1_v5_gn_5_191521 Lactuca sativa HOM05D000880 ORTHO05D004760 1.1e-188 664.5 845 49.9
Rhsim11G0035900 Rhododendron simsii HOM05D000880 ORTHO05D004760 1.1e-188 664.5 842 49.2
Ca_09177_v3 Cicer arietinum L. HOM05D000880 ORTHO05D004760 4.3e-188 662.5 888 48.3
AUR62005314 Chenopodium quinoa HOM05D000880 ORTHO05D004760 1.8e-186 657.1 874 48.1
FvH4_2g25830 Fragaria vesca HOM05D000880 ORTHO05D004760 4.0e-186 656.0 824 49.5
MSTRG.25483 Avicennia marina HOM05D000880 ORTHO05D004760 4.4e-185 652.5 743 52.2
Rhsim01G0285600 Rhododendron simsii HOM05D000880 ORTHO05D004760 2.9e-184 649.8 827 48.9
HanXRQChr01g0001311 Helianthus annuus HOM05D000880 ORTHO05D004760 1.4e-183 647.5 863 48.4
HPP92_011847 Vanilla planifolia HOM05D000880 ORTHO05D004760 3.2e-183 646.4 866 48.0
unitig_747.g21560 Utricularia gibba HOM05D000880 ORTHO05D004760 1.1e-178 631.3 871 48.1
TPR.G9606 Trifolium pratense HOM05D000880 ORTHO05D004760 1.5e-177 627.5 880 45.5
Medtr7g108730 Medicago truncatula HOM05D000880 ORTHO05D004760 7.6e-177 625.2 884 45.0
Os03g0343300 Oryza sativa ssp. japonica HOM05D000880 ORTHO05D004760 3.5e-174 616.3 883 47.5
Nitab4.5_0004207g0040 Nicotiana tabacum HOM05D000880 ORTHO05D004760 2.5e-172 610.1 883 45.5
Hma1.2p1_1471F.1_g285620 Hydrangea macrophylla HOM05D000880 ORTHO05D004760 3.3e-172 609.8 805 48.0
C09p01900 Brassica napus HOM05D000880 ORTHO05D004760 7.6e-169 598.6 872 47.2
BolC9t53125H Brassica oleracea HOM05D000880 ORTHO05D004760 7.6e-169 598.6 872 47.2
ECA248G0121 Erigeron canadensis HOM05D000880 ORTHO05D004760 1.1e-167 594.7 855 46.2
Zm00001eb016440 Zea mays HOM05D000880 ORTHO05D004760 4.2e-167 592.8 859 45.9
PSO478G4138 Papaver somniferum HOM05D000880 ORTHO05D004760 2.1e-166 590.5 748 49.5
ATR0100G058 Amborella trichopoda HOM05D000880 ORTHO05D004760 5.6e-164 582.4 873 43.4
Medtr3g113240 Medicago truncatula HOM05D000880 ORTHO05D004760 1.4e-159 567.8 855 43.9
Oeu028138.2 Olea europaea HOM05D000880 ORTHO05D004760 8.7e-157 558.5 769 47.2
Nitab4.5_0007049g0030 Nicotiana tabacum HOM05D000880 ORTHO05D004760 6.5e-144 515.8 611 49.4
Actinidia26752 Actinidia chinensis HOM05D000880 ORTHO05D004760 2.9e-136 490.3 575 52.7
Atru.chr5.2474 Acer truncatum HOM05D000880 ORTHO05D004760 1.1e-135 488.4 651 49.9
SEGI_18392 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 1.5e-132 478.0 1063 36.1
Prupe.8G262300 Prunus persica HOM05D000880 ORTHO05D004760 1.3e-131 474.9 643 49.0
CDE05G0797 Ceratophyllum demersum HOM05D000880 ORTHO05D004760 5.3e-130 469.5 841 41.5
BolC4t25292H Brassica oleracea HOM05D000880 ORTHO05D004760 2.0e-129 467.6 383 71.0
BcaC02g09729 Brassica carinata HOM05D000880 ORTHO05D004760 2.9e-128 463.8 383 70.2
BcaC07g42028 Brassica carinata HOM05D000880 ORTHO05D004760 1.1e-127 461.8 401 68.1
C02p30160 Brassica napus HOM05D000880 ORTHO05D004760 1.2e-121 441.8 392 67.3
BcaC06g34728 Brassica carinata HOM05D000880 ORTHO05D004760 1.1e-119 435.3 345 71.6
Medtr7g091790 Medicago truncatula HOM05D000880 ORTHO05D004760 9.4e-119 432.2 819 38.3
SMO146G0364 Selaginella moellendorffii HOM05D000880 ORTHO05D004760 1.8e-114 417.9 900 34.6
C08p50820 Brassica napus HOM05D000880 ORTHO05D004760 5.0e-112 409.8 381 64.3
VMungo1383G0181 Vigna mungo HOM05D000880 ORTHO05D004760 6.1e-110 402.9 435 53.3
Mapoly0012s0035 Marchantia polymorpha HOM05D000880 ORTHO05D004760 8.0e-110 402.5 1040 33.8
MBI19_g43564_MAGBIO Magnolia biondii HOM05D000880 ORTHO05D004760 2.5e-103 380.9 409 55.0
BcaC08g44566 Brassica carinata HOM05D000880 ORTHO05D004760 3.0e-101 374.0 345 63.8
BcaC03g15404 Brassica carinata HOM05D000880 ORTHO05D001048 6.8e-101 372.9 283 74.2
PSO541G3373 Papaver somniferum HOM05D000880 ORTHO05D004760 4.1e-98 363.6 441 50.6
BolC8t52610H Brassica oleracea HOM05D000880 ORTHO05D004760 5.0e-96 356.7 291 70.8
Pp3c9_17240 Physcomitrium patens HOM05D000880 ORTHO05D004760 2.9e-91 340.9 989 31.1
AagrBONN_evm.TU.Sc2ySwM_117.3282 Anthoceros agrestis HOM05D000880 ORTHO05D004760 4.6e-89 333.6 904 33.5
BraA04t17148Z Brassica rapa HOM05D000880 ORTHO05D004760 3.7e-83 313.9 290 65.5
PSO782G1438 Papaver somniferum HOM05D000880 ORTHO05D004760 8.3e-83 312.8 850 31.8
A04p15040 Brassica napus HOM05D000880 ORTHO05D004760 3.2e-82 310.8 291 66.0
A09p11280 Brassica napus HOM05D000880 ORTHO05D004760 1.9e-74 285.0 283 61.5
A04p00500 Brassica napus HOM05D000880 ORTHO05D004760 1.2e-73 282.3 283 61.1
TAR636G2791 Trochodendron aralioides HOM05D000880 ORTHO05D004760 6.0e-73 280.0 286 52.8
CBR_g19437 Chara braunii HOM05D000880 ORTHO05D004760 1.0e-72 279.3 974 27.8
Medtr8g058740 Medicago truncatula HOM05D000880 ORTHO05D004760 1.3e-72 278.9 343 46.4
TAR633G1122 Trochodendron aralioides HOM05D000880 ORTHO05D004760 6.6e-72 276.6 249 57.8
PGR003G0015 Punica granatum HOM05D000880 ORTHO05D004760 8.7e-72 276.2 310 49.4
VMungo1383G0715 Vigna mungo HOM05D000880 ORTHO05D004760 7.6e-68 263.1 211 64.5
MSTRG.25474 Avicennia marina HOM05D000880 ORTHO05D004760 1.3e-67 262.3 214 65.0
MCO13G364 Micromonas commoda HOM05D000880 ORTHO05D004760 3.3e-63 247.7 763 30.5
A10p23840 Brassica napus HOM05D000880 ORTHO05D004760 2.8e-62 244.6 183 72.1
C07p40760 Brassica napus HOM05D000880 ORTHO05D004760 4.5e-60 237.3 160 78.1
PRCOL_00002788 Prasinoderma coloniale HOM05D000880 ORTHO05D004760 1.8e-56 225.3 829 29.2
PSO210G4167 Papaver somniferum HOM05D000880 ORTHO05D004760 5.6e-55 220.3 300 47.7
Oeu000538.1 Olea europaea HOM05D000880 ORTHO05D004760 3.7e-46 191.0 467 33.0
AT5G36980 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 3.5e-41 174.5 187 60.4
SEGI_12067 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 4.6e-41 174.1 189 50.8
Gohir.D12G134950 Gossypium hirsutum HOM05D000880 ORTHO05D004760 1.3e-38 166.0 174 57.5
Gorai.008G145900 Gossypium raimondii HOM05D000880 ORTHO05D004760 1.3e-38 166.0 176 56.2
CAN.G1465.7 Capsicum annuum HOM05D000880 ORTHO05D004760 1.4e-37 162.5 127 66.1
SEGI_30897 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 2.4e-37 161.8 154 52.6
Cfa026849 Carpinus fangiana HOM05D000880 ORTHO05D004760 3.9e-32 144.4 651 27.0
TAR627G0201 Trochodendron aralioides HOM05D000880 ORTHO05D004760 6.3e-30 137.1 326 34.4
SMO146G0006 Selaginella moellendorffii HOM05D000880 ORTHO05D004760 6.9e-29 133.7 254 37.0
CAN.G1018.15 Capsicum annuum HOM05D000880 ORTHO05D004760 2.9e-27 128.3 137 49.6
Cre11.g478950 Chlamydomonas reinhardtii HOM05D000880 ORTHO05D004760 3.2e-26 124.8 998 23.5
Gohir.A12G131050 Gossypium hirsutum HOM05D000880 ORTHO05D004760 1.3e-22 112.8 127 52.8
SEGI_39037 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 6.3e-22 110.5 122 52.5
Cre11.g478966 Chlamydomonas reinhardtii HOM05D000880 ORTHO05D004760 3.6e-17 94.7 843 22.9
Rhsim01G0285700 Rhododendron simsii HOM05D000203 ORTHO05D000135 8.2e-14 83.6 252 33.3
BcaB04g17655 Brassica carinata HOM05D005969 ORTHO05D007407 2.6e-12 78.6 58 79.3
Actinidia21043 Actinidia chinensis HOM05D000203 ORTHO05D000135 9.4e-10 70.1 209 26.3
CAN.G1465.8 Capsicum annuum HOM05D000880 ORTHO05D004760 2.7e-09 68.6 82 46.3
A04p15050 Brassica napus HOM05D000880 ORTHO05D014501 7.5e-07 60.5 47 68.1
CAN.G1015.4 Capsicum annuum HOM05D004625 ORTHO05D006054 2.8e-06 58.5 50 58.0
C04p15890 Brassica napus HOM05D000022 ORTHO05D010270 4.8e-06 57.8 53 69.8


User provided reference genes

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