Gene: AT4G00830

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G00830
  • Transcript Identifier AT4G00830.1
  • Gene Type Coding gene
  • Location Chr4 : 352782-354965 : positive

Gene Family Information

  • ID HOM05D001873
  • #Genes/#Species 351/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G00830.1
  • symbol LIF2
  • full_name LHP1-Interacting Factor 2
  • uniprot Q9ASP6

Descriptions

  • Description RNA-binding (RRM/RBD/RNP motifs) family protein
  • Computational description RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G52660.2); Has 49171 Blast hits to 28860 proteins in 1092 species: Archae - 87; Bacteria - 2901; Metazoa - 24152; Fungi - 5892; Plants - 6872; Viruses - 415; Other Eukaryotes - 8852 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006952
IEA
GOA Databasedefense response
GO:0071395
IDA
Gene Ontologycellular response to jasmonic acid stimulus1
GO:0045893
IDA
Gene Ontologypositive regulation of transcription, DNA-templated1
GO:0050832
IMP
Gene Ontologydefense response to fungus2
GO:0045824
IMP
Gene Ontologynegative regulation of innate immune response2
GO:0045087
IMP
Gene Ontologyinnate immune response2
GO:0042742
IMP
Gene Ontologydefense response to bacterium2
GO:0010439
IMP
Gene Ontologyregulation of glucosinolate biosynthetic process2
GO:0009617
IEP
Gene Ontologyresponse to bacterium2
GO:1905933
IMP
Gene Ontologyregulation of cell fate determination3
GO:1902464
IMP
Gene Ontologyregulation of histone H3-K27 trimethylation3
GO:0010468
IMP
Gene Ontologyregulation of gene expression3
GO:0009909
IMP
Gene Ontologyregulation of flower development3

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0043565
IDA
Gene Ontologysequence-specific DNA binding1
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003729
IDA, HDA
Gene OntologymRNA binding4 5
GO:0003682
IDA
Gene Ontologychromatin binding1
GO:0005515
IPI
Gene Ontologyprotein binding3

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005783
IEA
GOA Databaseendoplasmic reticulum
GO:0043231
IEA
GOA Databaseintracellular membrane-bounded organelle
GO:0005829
IDA
GOA Databasecytosol
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IDA
ISM, IBA
Gene Ontologynucleus3 6
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005737
IDA
Gene Ontologycytoplasm3

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 RNA-binding domain superfamily
IPR003954 RNA recognition motif domain, eukaryote
IPR000504 RNA recognition motif domain
Mapman id Description
35.1 not assigned.annotated