Gene: AT4G00810
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT4G00810
- Transcript Identifier AT4G00810.2
- Gene Type Coding gene
- Location Chr4 : 346179-346957 : negative
Gene Family Information
- ID HOM05D001784
- #Genes/#Species 366/96
- Phylogenetic origin
- ID ORTHO05D001699
- #Genes/#Species 369/96
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT4G00810.2
- uniprot O23095
Descriptions
- Description 60S acidic ribosomal protein family
- Computational description 60S acidic ribosomal protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation; LOCATED IN: cytosol, cytosolic ribosome, ribosome, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein family (TAIR:AT5G47700.2); Has 2192 Blast hits to 2192 proteins in 389 species: Archae - 91; Bacteria - 0; Metazoa - 852; Fungi - 488; Plants - 457; Viruses - 0; Other Eukaryotes - 304 (source: NCBI BLink).
- Computational description 60S acidic ribosomal protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation; LOCATED IN: cytosol, cytosolic ribosome, ribosome, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein family (TAIR:AT5G47700.2); Has 2191 Blast hits to 2191 proteins in 389 species: Archae - 90; Bacteria - 0; Metazoa - 852; Fungi - 488; Plants - 457; Viruses - 0; Other Eukaryotes - 304 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0032147 | IEA | GOA Database | activation of protein kinase activity | |
| GO:0006414 | IEA | Gene Ontology | translational elongation | |
| GO:0002181 | IBA | Gene Ontology | cytoplasmic translation | 1 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003735 | IDA IEA | GOA Database | structural constituent of ribosome | |
| GO:0003735 | IBA | Gene Ontology | structural constituent of ribosome | 1 |
| GO:0044877 | ISO | PLAZA Integrative Orthology | protein-containing complex binding | Zm00001eb260880 |
| GO:0030295 | IBA | Gene Ontology | protein kinase activator activity | 1 |
| GO:0043021 | IBA | Gene Ontology | ribonucleoprotein complex binding | 1 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005840 | IEA | GOA Database | ribosome | |
| GO:0005634 | IDA | GOA Database | nucleus | |
| GO:0005829 | IDA | GOA Database | cytosol | |
| GO:0005829 | HDA | Gene Ontology | cytosol | 2 |
| GO:0022626 | IDA | GOA Database | cytosolic ribosome | |
| GO:0022626 | HDA | Gene Ontology | cytosolic ribosome | 3 |
| GO:0022625 | IBA | Gene Ontology | cytosolic large ribosomal subunit | 1 |
| GO:0005737 | IDA | Gene Ontology | cytoplasm | 4 |
| GO:0005654 | IDA | Gene Ontology | nucleoplasm | 4 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR038716 | Ribosomal protein P1/P2, N-terminal domain |
| Mapman id | Description |
|---|---|
| 17.1.2.1.46 | Protein biosynthesis.ribosome biogenesis.large ribosomal subunit (LSU).LSU proteome.component RPP1 |