Gene: AT4G00240

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G00240
  • Transcript Identifier AT4G00240.1
  • Gene Type Coding gene
  • Location Chr4 : 106380-110718 : negative

Gene Family Information

  • ID HOM05D000315
  • #Genes/#Species 1462/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G00240.1
  • symbol PLDBETA2
  • uniprot O23078

Descriptions

  • Description phospholipase D beta 2
  • Computational description phospholipase D beta 2 (PLDBETA2); FUNCTIONS IN: phospholipase D activity; INVOLVED IN: phosphatidylcholine metabolic process, metabolic process; LOCATED IN: membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), Phospholipase D (InterPro:IPR015679), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Phospholipase D, plant (InterPro:IPR011402), C2 calcium-dependent membrane targeting (InterPro:IPR000008), Phospholipase D/Transphosphatidylase (InterPro:IPR001736); BEST Arabidopsis thaliana protein match is: phospholipase D beta 1 (TAIR:AT2G42010.1); Has 2407 Blast hits to 1935 proteins in 427 species: Archae - 0; Bacteria - 522; Metazoa - 526; Fungi - 534; Plants - 642; Viruses - 3; Other Eukaryotes - 180 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009395
IBA
Gene Ontologyphospholipid catabolic process1
GO:0046470
IEA
Gene Ontologyphosphatidylcholine metabolic process
GO:0046470
IEA
InterProphosphatidylcholine metabolic process
GO:0016042
IEA
GOA Databaselipid catabolic process
GO:0006629
IEA
GOA Databaselipid metabolic process

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005509
IEA
Gene Ontologycalcium ion binding
GO:0005509
IEA
InterProcalcium ion binding
GO:0004630
IDA
ISS, IBA
IEA
Gene Ontologyphospholipase D activity1 2
GO:0004630
IEA
InterProphospholipase D activity
GO:0003824
IEA
GOA Databasecatalytic activity
GO:0003824
IEA
InterProcatalytic activity
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0005515
IPI
Gene Ontologyprotein binding3
GO:0070290
IEA
Gene OntologyN-acylphosphatidylethanolamine-specific phospholipase D activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016020
IEA
Gene Ontologymembrane
GO:0016020
IEA
InterPromembrane
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005886
IBA
Gene Ontologyplasma membrane1
GO:0005634
ISM
Gene Ontologynucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR035892 C2 domain superfamily
IPR000008 C2 domain
IPR015679 Phospholipase D family
IPR001736 Phospholipase D/Transphosphatidylase
IPR011402 Phospholipase D, plant
IPR024632 Phospholipase D, C-terminal
Mapman id Description
5.7.2.4.2 Lipid metabolism.lipid degradation.phospholipase activities.phospholipase D activities.phospholipase D (PLD-beta/gamma)