Gene: AT3G56340
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT3G56340
- Transcript Identifier AT3G56340.1
- Gene Type Coding gene
- Location Chr3 : 20892309-20893343 : negative
Gene Family Information
- ID HOM05D001179
- #Genes/#Species 528/100
- Phylogenetic origin
- ID ORTHO05D002194
- #Genes/#Species 309/97
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT3G56340.1
- uniprot Q9LYK9
Descriptions
- Description Ribosomal protein S26e family protein
- Computational description Ribosomal protein S26e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S26e (InterPro:IPR000892); BEST Arabidopsis thaliana protein match is: Ribosomal protein S26e family protein (TAIR:AT2G40510.1); Has 761 Blast hits to 761 proteins in 271 species: Archae - 53; Bacteria - 0; Metazoa - 311; Fungi - 152; Plants - 116; Viruses - 0; Other Eukaryotes - 129 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006412 | IEA | Gene Ontology | translation | |
| GO:0006412 | IEA | InterPro | translation |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003735 | IDA IEA | GOA Database | structural constituent of ribosome | |
| GO:0003735 | IBA | Gene Ontology | structural constituent of ribosome | 1 |
| GO:0003735 | IEA | InterPro | structural constituent of ribosome | |
| GO:0003729 | IDA IBA | Gene Ontology | mRNA binding | 1 2 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005840 | IEA | GOA Database | ribosome | |
| GO:0005840 | IEA | InterPro | ribosome | |
| GO:0022626 | IDA | GOA Database | cytosolic ribosome | |
| GO:0022626 | HDA | Gene Ontology | cytosolic ribosome | 3 |
| GO:0022627 | IDA | GOA Database | cytosolic small ribosomal subunit | |
| GO:0022627 | HDA IBA | Gene Ontology | cytosolic small ribosomal subunit | 1 4 |
| GO:0005737 | ISM | Gene Ontology | cytoplasm | |
| GO:0005730 | IDA | Gene Ontology | nucleolus | 5 |
| GO:0005634 | IDA | Gene Ontology | nucleus | 5 |
| GO:0005829 | HDA RCA | Gene Ontology | cytosol | 6 7 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 17.1.3.1.27 | Protein biosynthesis.ribosome biogenesis.small ribosomal subunit (SSU).SSU proteome.component RPS26 |