Gene: AT3G55320

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G55320
  • Transcript Identifier AT3G55320.1
  • Gene Type Coding gene
  • Location Chr3 : 20507391-20513393 : negative

Gene Family Information

  • ID HOM05D000068
  • #Genes/#Species 3957/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G55320.1
  • symbol ABCB20
  • Alias PGP20,P-glycoprotein 20
  • full_name ATP-binding cassette B20
  • uniprot Q9M3B9

Descriptions

  • Description P-glycoprotein 20
  • Computational description P-glycoprotein 20 (PGP20); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport, transmembrane transport; LOCATED IN: nucleus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain (InterPro:IPR001140); BEST Arabidopsis thaliana protein match is: P-glycoprotein 6 (TAIR:AT2G39480.1); Has 718468 Blast hits to 361578 proteins in 4093 species: Archae - 12537; Bacteria - 570379; Metazoa - 18035; Fungi - 12093; Plants - 8938; Viruses - 13; Other Eukaryotes - 96473 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0055085
IEA
Gene Ontologytransmembrane transport
GO:0055085
IEA
InterProtransmembrane transport

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0140359
IEA
Gene OntologyABC-type transporter activity
GO:0140359
IEA
InterProABC-type transporter activity
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0042626
ISS, IBA
Gene OntologyATPase-coupled transmembrane transporter activity1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005886
IDA
GOA Databaseplasma membrane
GO:0016021
IEA
GOA Databaseintegral component of membrane
GO:0016021
IEA
InterProintegral component of membrane
GO:0005634
IDA
GOA Databasenucleus
GO:0009507
ISM
Gene Ontologychloroplast
GO:0016020
IEA
GOA Databasemembrane
GO:0005887
IBA
Gene Ontologyintegral component of plasma membrane1
GO:0005829
HDA
Gene Ontologycytosol2

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR003439 ABC transporter-like, ATP-binding domain
IPR036640 ABC transporter type 1, transmembrane domain superfamily
IPR011527 ABC transporter type 1, transmembrane domain
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR003593 AAA+ ATPase domain
Mapman id Description
24.1.3.1.1 Solute transport.primary active transport.ABC superfamily.ABC1 family.subfamily ABCB transporter