Gene: AT3G54780

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G54780
  • Transcript Identifier AT3G54780.3
  • Gene Type Coding gene
  • Location Chr3 : 20278985-20281429 : positive

Gene Family Information

  • ID HOM05D000620
  • #Genes/#Species 922/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G54780.3
  • uniprot F4JE23

Descriptions

  • Description Zinc finger (C3HC4-type RING finger) family protein
  • Computational description Zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: Zinc finger (C3HC4-type RING finger) family protein (TAIR:AT2G38970.1); Has 4339 Blast hits to 4316 proteins in 749 species: Archae - 84; Bacteria - 1602; Metazoa - 1164; Fungi - 180; Plants - 555; Viruses - 5; Other Eukaryotes - 749 (source: NCBI BLink).
  • Computational description Zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: Zinc finger (C3HC4-type RING finger) family protein (TAIR:AT2G38970.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005576
ISM
Gene Ontologyextracellular region
GO:0005886
ISM
Gene Ontologyplasma membrane

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036465 von Willebrand factor A-like domain superfamily
IPR002035 von Willebrand factor, type A
IPR001841 Zinc finger, RING-type
IPR032838 VWA-Hint protein, Vwaint domain
IPR013083 Zinc finger, RING/FYVE/PHD-type
Mapman id Description
35.1 not assigned.annotated