Gene: AT3G54500
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT3G54500
- Transcript Identifier AT3G54500.4
- Gene Type Coding gene
- Location Chr3 : 20175792-20178737 : negative
Gene Family Information
- ID HOM05D004414
- #Genes/#Species 162/90
- Phylogenetic origin
- ID ORTHO05D001824
- #Genes/#Species 350/97
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid AT3G54500.4
- Alias LNK2,night light-inducible and clock-regulated 2
- uniprot F4JCX9
Descriptions
- Description agglutinin-like protein
- Computational description BEST Arabidopsis thaliana protein match is: dentin sialophosphoprotein-related (TAIR:AT5G64170.1); Has 183 Blast hits to 175 proteins in 44 species: Archae - 0; Bacteria - 4; Metazoa - 38; Fungi - 11; Plants - 120; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
- Computational description FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: dentin sialophosphoprotein-related (TAIR:AT5G64170.2).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006355 | IEA | Gene Ontology | regulation of transcription, DNA-templated | |
| GO:0006355 | IEA | InterPro | regulation of transcription, DNA-templated | |
| GO:0009649 | IGI | Gene Ontology | entrainment of circadian clock | 1 |
| GO:0032922 | IDA | Gene Ontology | circadian regulation of gene expression | 1 |
| GO:0048511 | IEA | GOA Database | rhythmic process | |
| GO:0007623 | IEA | GOA Database | circadian rhythm | |
| GO:0007623 | IEA | InterPro | circadian rhythm |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003712 | IDA | Gene Ontology | transcription coregulator activity | 1 |
| GO:0005515 | IPI | Gene Ontology | protein binding | 1 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | IDA ISM | Gene Ontology | nucleus | 1 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR039928 | LNK family |
| Mapman id | Description |
|---|---|
| 27.1.6.1 | Multi-process regulation.circadian clock system.evening element regulation.transcriptional co-activator (LNK) |