Gene: AT3G54200
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT3G54200
- Transcript Identifier AT3G54200.1
- Gene Type Coding gene
- Location Chr3 : 20065731-20066438 : positive
Gene Family Information
- ID HOM05D000172
- #Genes/#Species 2188/100
- Phylogenetic origin
- ID ORTHO05D000273
- #Genes/#Species 1231/95
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid AT3G54200.1
- uniprot Q9M386
Descriptions
- Description Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
- Computational description Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to plasma membrane, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (TAIR:AT3G05975.1); Has 631 Blast hits to 630 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 631; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0008150 | ND | Gene Ontology | biological_process |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003674 | ND | Gene Ontology | molecular_function |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | ISM | Gene Ontology | nucleus | |
| GO:0046658 | HDA | Gene Ontology | anchored component of plasma membrane | 1 |
| GO:0005886 | IDA | GOA Database | plasma membrane | |
| GO:0005886 | HDA | Gene Ontology | plasma membrane | 2 |
| GO:0009506 | IDA | GOA Database | plasmodesma | |
| GO:0009506 | HDA | Gene Ontology | plasmodesma | 3 |
| GO:0005829 | HDA | Gene Ontology | cytosol | 4 |
| GO:0016021 | IEA | GOA Database | integral component of membrane | |
| GO:0016020 | IEA | GOA Database | membrane |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR004864 | Late embryogenesis abundant protein, LEA_2 subgroup |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |