Gene: AT3G53890

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G53890
  • Transcript Identifier AT3G53890.1
  • Gene Type Coding gene
  • Location Chr3 : 19955582-19956049 : negative

Gene Family Information

  • ID HOM05D001496
  • #Genes/#Species 423/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G53890.1
  • uniprot Q9M337

Descriptions

  • Description Ribosomal protein S21e
  • Computational description Ribosomal protein S21e ; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S21e (InterPro:IPR001931), Ribosomal protein S21e, conserved site (InterPro:IPR018279); BEST Arabidopsis thaliana protein match is: Ribosomal protein S21e (TAIR:AT5G27700.1); Has 661 Blast hits to 661 proteins in 257 species: Archae - 0; Bacteria - 0; Metazoa - 294; Fungi - 137; Plants - 120; Viruses - 0; Other Eukaryotes - 110 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006412
IEA
Gene Ontologytranslation
GO:0006412
IEA
InterProtranslation
GO:0000447
IBA
Gene Ontologyendonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)1
GO:0000461
IBA
Gene Ontologyendonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)1
GO:0009658
IGI
Gene Ontologychloroplast organization2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003735
IDA
IEA
GOA Databasestructural constituent of ribosome
GO:0003735
IBA
Gene Ontologystructural constituent of ribosome1
GO:0003735
IEA
InterProstructural constituent of ribosome

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005840
IEA
GOA Databaseribosome
GO:0005840
IEA
InterProribosome
GO:0022626
IDA
GOA Databasecytosolic ribosome
GO:0022626
HDA
Gene Ontologycytosolic ribosome3
GO:0022627
IDA
GOA Databasecytosolic small ribosomal subunit
GO:0022627
HDA
IBA
Gene Ontologycytosolic small ribosomal subunit1 4
GO:0042788
IDA
GOA Databasepolysomal ribosome
GO:0005737
ISM
Gene Ontologycytoplasm
GO:0005829
IDA, HDA
Gene Ontologycytosol2 5
GO:0005634
IDA
Gene Ontologynucleus2

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001931 Ribosomal protein S21e
IPR038579 Ribosomal protein S21e superfamily
Mapman id Description
17.1.3.1.23 Protein biosynthesis.ribosome biogenesis.small ribosomal subunit (SSU).SSU proteome.component RPS21