Gene: AT3G52560
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT3G52560
- Transcript Identifier AT3G52560.1
- Gene Type Coding gene
- Location Chr3 : 19494678-19495954 : negative
Gene Family Information
- ID HOM05D001590
- #Genes/#Species 404/99
- Phylogenetic origin
- ID ORTHO05D001495
- #Genes/#Species 398/99
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT3G52560.1
- symbol UEV1D-4
- Alias MMZ4,MMS2 ZWEI HOMOLOGUE 4,UEV1D,UBIQUITIN E2 VARIANT 1D
- uniprot Q9SVD7
Descriptions
- Description ubiquitin E2 variant 1D-4
- Computational description ubiquitin E2 variant 1D-4 (UEV1D-4); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: MMS ZWEI homologue 3 (TAIR:AT2G36060.1); Has 2665 Blast hits to 2665 proteins in 275 species: Archae - 0; Bacteria - 0; Metazoa - 1316; Fungi - 370; Plants - 595; Viruses - 0; Other Eukaryotes - 384 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006301 | IBA | GOA Database | postreplication repair | |
| GO:0006301 | IGI | Gene Ontology | postreplication repair | 1 |
| GO:0006974 | IMP | Gene Ontology | cellular response to DNA damage stimulus | 1 |
| GO:1902916 | IDA | Gene Ontology | positive regulation of protein polyubiquitination | 1 |
| GO:0070534 | IBA | GOA Database | protein K63-linked ubiquitination | |
| GO:0000209 | IBA | GOA Database | protein polyubiquitination |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005515 | IPI | Gene Ontology | protein binding | 1 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IBA | GOA Database | nucleus | |
| GO:0005634 | ISM | Gene Ontology | nucleus | |
| GO:0031372 | IPI | Gene Ontology | UBC13-MMS2 complex | 1 |
| GO:0005829 | HDA | Gene Ontology | cytosol | 2 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 19.2.2.1.5.1.2 | Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.ubiquitin conjugation (ubiquitylation).polyubiquitination.Ubc13-Uev1 conjugating E2 complex.component Uev1 |