Gene: AT3G52030

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G52030
  • Transcript Identifier AT3G52030.2
  • Gene Type Coding gene
  • Location Chr3 : 19301872-19304227 : positive

Gene Family Information

  • ID HOM05D002214
  • #Genes/#Species 304/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G52030.2
  • uniprot Q9SV01

Descriptions

  • Description F-box family protein with WD40/YVTN repeat doamin
  • Computational description F-box family protein with WD40/YVTN repeat doamin; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), WD40 repeat-like-containing domain (InterPro:IPR011046), F-box domain, Skp2-like (InterPro:IPR022364), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); Has 641 Blast hits to 623 proteins in 165 species: Archae - 0; Bacteria - 72; Metazoa - 330; Fungi - 119; Plants - 62; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).
  • Computational description F-box family protein with WD40/YVTN repeat doamin; FUNCTIONS IN: molecular_function unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), WD40 repeat (InterPro:IPR001680), WD40 repeat-like-containing domain (InterPro:IPR011046), F-box domain, Skp2-like (InterPro:IPR022364), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0051568
IBA
Gene Ontologyhistone H3-K4 methylation1
GO:0006474
ISO
PLAZA Homology (enrichment)N-terminal protein amino acid acetylation HOM05D002214

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IPI
Gene Ontologyprotein binding2
GO:0005515
IEA
InterProprotein binding
GO:0042393
IBA
Gene Ontologyhistone binding1
GO:0008080
ISO
PLAZA Homology (enrichment)N-acetyltransferase activity HOM05D002214
GO:0004596
ISO
PLAZA Homology (enrichment)peptide alpha-N-acetyltransferase activity HOM05D002214

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISM
Gene Ontologynucleus
GO:0080008
ISS
Gene OntologyCul4-RING E3 ubiquitin ligase complex3
GO:0048188
IBA
Gene OntologySet1C/COMPASS complex1
GO:0031415
ISO
PLAZA Homology (enrichment)NatA complex HOM05D002214

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036047 F-box-like domain superfamily
IPR036322 WD40-repeat-containing domain superfamily
IPR015943 WD40/YVTN repeat-like-containing domain superfamily
IPR001810 F-box domain
IPR001680 WD40 repeat
Mapman id Description
35.1 not assigned.annotated