Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G52030 Arabidopsis thaliana HOM05D002214 ORTHO05D007367 9.0e-251 869.8 434 100.0
AL5G32570 Arabidopsis lyrata HOM05D002214 ORTHO05D007367 5.1e-230 800.8 448 90.0
CARHR161660 Cardamine hirsuta HOM05D002214 ORTHO05D007367 9.7e-229 796.6 432 90.3
Carub.0005s1835 Capsella rubella HOM05D002214 ORTHO05D007367 3.9e-222 774.6 430 90.9
Thhalv10010397m.g Eutrema salsugineum HOM05D002214 ORTHO05D007367 1.5e-221 772.7 432 90.0
Sp5g10260 Schrenkiella parvula HOM05D002214 ORTHO05D007367 3.1e-219 765.0 434 88.5
A03p48610 Brassica napus HOM05D002214 ORTHO05D007367 1.5e-218 762.7 434 87.8
C07p46730 Brassica napus HOM05D002214 ORTHO05D007367 3.4e-218 761.5 434 87.3
BcaC06g33020 Brassica carinata HOM05D002214 ORTHO05D007367 2.9e-217 758.4 434 87.1
BcaC06g33377 Brassica carinata HOM05D002214 ORTHO05D007367 8.5e-217 756.9 434 86.9
BolC7t45191H Brassica oleracea HOM05D002214 ORTHO05D007367 7.4e-213 743.8 451 83.4
BraA03t13966Z Brassica rapa HOM05D002214 ORTHO05D007367 4.1e-203 711.4 433 82.9
THA.LOC104817574 Tarenaya hassleriana HOM05D002214 ORTHO05D007367 1.0e-182 643.7 433 73.0
TWI09G0406 Tripterygium wilfordii HOM05D002214 ORTHO05D007367 1.1e-147 527.3 426 61.3
Gorai.004G170100 Gossypium raimondii HOM05D002214 ORTHO05D007367 9.2e-147 524.2 432 59.5
Manes.07G010800 Manihot esculenta HOM05D002214 ORTHO05D007367 1.6e-146 523.5 432 61.3
Ciclev10031605m.g Citrus clementina HOM05D002214 ORTHO05D007367 2.3e-145 519.6 434 59.9
Duzib138G1340 Durio zibethinus HOM05D002214 ORTHO05D007367 1.1e-144 517.3 412 61.4
Thecc.01G406200 Theobroma cacao HOM05D002214 ORTHO05D007367 9.6e-144 514.2 426 59.6
Gohir.A08G142300 Gossypium hirsutum HOM05D002214 ORTHO05D007367 1.3e-143 513.8 432 58.3
Cfa010812 Carpinus fangiana HOM05D002214 ORTHO05D007367 6.9e-142 508.1 434 58.1
CiPaw.14G003400 Carya illinoinensis HOM05D002214 ORTHO05D007367 9.0e-142 507.7 431 57.8
GSVIVG01032215001 Vitis vinifera HOM05D002214 ORTHO05D007367 1.5e-141 506.9 431 57.1
Potri.009G056500 Populus trichocarpa HOM05D002214 ORTHO05D007367 1.9e-139 500.0 431 58.2
RcHm_v2.0_Chr1g0318361 Rosa chinensis HOM05D002214 ORTHO05D007367 3.2e-139 499.2 423 58.4
FAN10G2270 Fragaria x ananassa HOM05D002214 ORTHO05D007367 3.3e-136 489.2 421 56.5
FAN03G2729 Fragaria x ananassa HOM05D002214 ORTHO05D007367 4.3e-136 488.8 423 56.7
Sc11g0009040 Simmondsia chinensis HOM05D002214 ORTHO05D007367 5.6e-136 488.4 428 56.3
CANSAT80G0536 Cannabis sativa HOM05D002214 ORTHO05D007367 2.1e-135 486.5 406 56.9
Eucgr.G03320 Eucalyptus grandis HOM05D002214 ORTHO05D007367 1.4e-134 483.8 413 57.1
Actinidia19424 Actinidia chinensis HOM05D002214 ORTHO05D007367 3.4e-133 479.2 431 54.8
Rhsim07G0058900 Rhododendron simsii HOM05D002214 ORTHO05D007367 3.4e-133 479.2 431 53.8
Eucgr.G03301 Eucalyptus grandis HOM05D002214 ORTHO05D007367 4.5e-133 478.8 413 56.4
Hma1.2p1_0685F.1_g203260 Hydrangea macrophylla HOM05D002214 ORTHO05D007367 7.6e-133 478.0 419 55.4
MD07G1023200 Malus domestica HOM05D002214 ORTHO05D007367 2.2e-132 476.5 428 55.4
Sed0008197 Sechium edule HOM05D002214 ORTHO05D007367 7.9e-130 468.0 424 55.0
Aqoxy2G00221 Aquilegia oxysepala HOM05D002214 ORTHO05D007367 2.5e-128 463.0 423 54.6
CsaV3_7G030710 Cucumis sativus L. HOM05D002214 ORTHO05D007367 4.3e-128 462.2 428 53.7
AUR62023095 Chenopodium quinoa HOM05D002214 ORTHO05D007367 3.7e-127 459.1 412 52.2
Lj3g0007976 Lotus japonicus HOM05D002214 ORTHO05D007367 1.8e-126 456.8 423 53.7
Prupe.2G024000 Prunus persica HOM05D002214 ORTHO05D007367 1.2e-125 454.1 428 54.7
Lalb_Chr25g0282551 Lupinus albus HOM05D002214 ORTHO05D007367 1.5e-125 453.8 421 53.7
Nn7g36334 Nelumbo nucifera HOM05D002214 ORTHO05D007367 4.5e-125 452.2 407 53.8
Glyma.11G159230 Glycine max HOM05D002214 ORTHO05D007367 6.4e-124 448.4 415 53.0
Sopen01g034840 Solanum pennellii HOM05D002214 ORTHO05D007367 1.1e-123 447.6 426 51.9
CAN.G909.6 Capsicum annuum HOM05D002214 ORTHO05D007367 3.2e-123 446.0 421 53.2
Solyc01g087910.4 Solanum lycopersicum HOM05D002214 ORTHO05D007367 9.3e-123 444.5 430 52.6
Ca_24837_v3 Cicer arietinum L. HOM05D002214 ORTHO05D007367 2.7e-122 443.0 419 52.5
Atru.chr11.2515 Acer truncatum HOM05D002214 ORTHO05D007367 7.9e-122 441.4 431 52.2
arahy.Tifrunner.gnm1.ann1.IP56PK Arachis hypogaea HOM05D002214 ORTHO05D007367 1.0e-121 441.0 428 50.7
QL04p010195 Quercus lobata HOM05D002214 ORTHO05D007367 1.0e-121 441.0 446 50.0
Psat5g212440 Pisum sativum HOM05D002214 ORTHO05D007367 1.8e-121 440.3 419 51.8
vmacro13697 Vaccinium macrocarpon HOM05D002214 ORTHO05D007367 3.0e-121 439.5 465 49.2
Medtr3g034210 Medicago truncatula HOM05D002214 ORTHO05D007367 3.9e-121 439.1 427 50.8
arahy.Tifrunner.gnm1.ann1.KRTV89 Arachis hypogaea HOM05D002214 ORTHO05D007367 1.5e-120 437.2 428 50.2
Phvul.005G035100 Phaseolus vulgaris HOM05D002214 ORTHO05D007367 4.3e-120 435.6 418 52.2
VMungo1217G0001 Vigna mungo HOM05D002214 ORTHO05D007367 3.7e-119 432.6 418 50.7
DCAR_022375 Daucus carota HOM05D002214 ORTHO05D007367 4.8e-119 432.2 429 49.7
Cc02_g28820 Coffea canephora HOM05D002214 ORTHO05D007367 1.1e-118 431.0 512 44.5
PGR031G3638 Punica granatum HOM05D002214 ORTHO05D007367 1.8e-118 430.3 475 48.2
TPR.G14558 Trifolium pratense HOM05D002214 ORTHO05D007367 6.9e-118 428.3 428 49.5
Gohir.D08G163300 Gossypium hirsutum HOM05D002214 ORTHO05D007367 4.5e-117 425.6 312 63.8
SGA_v2.0_scaffold5G02954 Striga asiatica HOM05D002214 ORTHO05D007367 7.6e-117 424.9 424 50.7
Migut.N01800 Erythranthe guttata HOM05D002214 ORTHO05D007367 1.9e-115 420.2 460 47.0
Lsat_1_v5_gn_7_35840 Lactuca sativa HOM05D002214 ORTHO05D007367 3.5e-114 416.0 432 47.9
CSS0000146 Camellia sinensis var. sinensis HOM05D002214 ORTHO05D007367 4.6e-114 415.6 434 50.2
TAR633G1256 Trochodendron aralioides HOM05D002214 ORTHO05D007367 3.9e-113 412.5 379 54.1
PSO339G3363 Papaver somniferum HOM05D002214 ORTHO05D007367 4.1e-110 402.5 417 51.1
Peaxi162Scf01270g00126 Petunia axillaris HOM05D002214 ORTHO05D007367 9.0e-110 401.4 441 49.2
FvH4_7g01770 Fragaria vesca HOM05D002214 ORTHO05D007367 2.5e-107 393.3 309 61.5
PSO384G3385 Papaver somniferum HOM05D002214 ORTHO05D007367 1.6e-106 390.6 420 49.8
Nitab4.5_0001244g0060 Nicotiana tabacum HOM05D002214 ORTHO05D007367 2.7e-106 389.8 416 49.3
Ah.16g100650 Amaranthus hybridus HOM05D002214 ORTHO05D007367 1.0e-105 387.9 355 52.7
ECA236G0637 Erigeron canadensis HOM05D002214 ORTHO05D001664 1.4e-105 387.5 396 48.5
HPP92_021380 Vanilla planifolia HOM05D002214 ORTHO05D007367 6.9e-102 375.2 417 46.0
unitig_22.g5896 Utricularia gibba HOM05D002214 ORTHO05D007367 4.5e-101 372.5 426 43.9
MBI03_g28525_MAGBIO Magnolia biondii HOM05D002214 ORTHO05D007367 2.2e-100 370.2 426 45.8
ATR0782G063 Amborella trichopoda HOM05D002214 ORTHO05D007367 6.5e-100 368.6 416 46.9
Zm00001eb091260 Zea mays HOM05D002214 ORTHO05D007367 2.5e-99 366.7 413 44.1
Dinv07431 Davidia involucrata HOM05D002214 ORTHO05D005113 5.5e-99 365.5 310 59.0
ClCG09G004430 Citrullus lanatus HOM05D002214 ORTHO05D007367 4.7e-98 362.5 380 50.5
Os11g0182400 Oryza sativa ssp. japonica HOM05D002214 ORTHO05D007367 3.9e-97 359.4 408 44.1
EL10Ac2g04369 Beta vulgaris HOM05D002214 ORTHO05D007367 1.1e-96 357.8 420 44.0
QL04p010150 Quercus lobata HOM05D002214 ORTHO05D007367 1.7e-95 354.0 357 51.3
Aa31LG10G14890 Aethionema arabicum HOM05D002214 ORTHO05D007367 6.3e-95 352.1 243 73.3
Nitab4.5_0008942g0050 Nicotiana tabacum HOM05D002214 ORTHO05D007367 6.5e-92 342.0 429 45.0
Oeu051405.1 Olea europaea HOM05D002214 ORTHO05D007367 5.3e-86 322.4 313 50.8
FAN24G1013 Fragaria x ananassa HOM05D002214 ORTHO05D007367 2.1e-82 310.5 451 43.0
FvH4_2g17890 Fragaria vesca HOM05D002214 ORTHO05D007367 6.1e-82 308.9 451 42.8
QL04p010068 Quercus lobata HOM05D002214 ORTHO05D007367 2.3e-81 307.0 254 58.7
HanXRQChr04g0119861 Helianthus annuus HOM05D002214 ORTHO05D007367 6.3e-79 298.9 281 52.7
FAN15G3441 Fragaria x ananassa HOM05D002214 ORTHO05D007367 1.6e-77 294.3 449 41.2
FAN24G2408 Fragaria x ananassa HOM05D002214 ORTHO05D007367 4.2e-75 286.2 450 40.0
Haze_03152 Corylus avellana HOM05D002214 ORTHO05D007367 5.5e-75 285.8 417 42.0
Haze_03149 Corylus avellana HOM05D002214 ORTHO05D007367 2.7e-74 283.5 417 41.7
SalBow6G2835 Salvia bowleyana HOM05D002214 ORTHO05D007367 4.7e-74 282.7 296 50.0
AUR62009418 Chenopodium quinoa HOM05D002214 ORTHO05D007367 8.3e-71 271.9 412 35.7
FAN06G2164 Fragaria x ananassa HOM05D002214 ORTHO05D007367 3.1e-70 270.0 240 56.2
MELO3C023585.2 Cucumis melo HOM05D002214 ORTHO05D007367 5.4e-70 269.2 432 39.4
FAN27G1816 Fragaria x ananassa HOM05D002214 ORTHO05D007367 5.4e-70 269.2 448 39.5
FAN27G1164 Fragaria x ananassa HOM05D002214 ORTHO05D007367 5.5e-67 259.2 420 40.5
Cpa.g.sc125.50 Carica papaya HOM05D002214 ORTHO05D007367 4.9e-63 246.1 191 59.7
Cpa.g.sc125.51 Carica papaya HOM05D002214 ORTHO05D007367 3.2e-62 243.4 242 53.7
QL04p010120 Quercus lobata HOM05D002214 ORTHO05D007367 7.8e-61 238.8 205 60.0
RcHm_v2.0_Chr6g0283161 Rosa chinensis HOM05D002214 ORTHO05D007367 3.7e-55 219.9 323 44.3
AagrBONN_evm.TU.Sc2ySwM_344.2511 Anthoceros agrestis HOM05D002214 ORTHO05D007367 7.3e-51 205.7 446 28.9
COL.COLO4_12334 Corchorus olitorius HOM05D000031 ORTHO05D000030 1.8e-49 201.1 340 35.3
Hund16632 Selenicereus undatus HOM05D002214 ORTHO05D007367 1.6e-42 177.9 165 51.5
FvH4_2g17910 Fragaria vesca HOM05D002214 ORTHO05D007367 3.6e-42 176.8 231 42.4
FAN24G3278 Fragaria x ananassa HOM05D002214 ORTHO05D007367 3.6e-42 176.8 231 42.4
CDE04G0429 Ceratophyllum demersum HOM05D002214 ORTHO05D007367 4.0e-41 173.3 190 42.1
Pp3c8_19810 Physcomitrium patens HOM05D002214 ORTHO05D007367 2.6e-40 170.6 408 25.2
MD07G1016900 Malus domestica HOM05D002214 ORTHO05D007367 9.9e-40 168.7 223 41.7
Aa31LG10G14900 Aethionema arabicum HOM05D002214 ORTHO05D007367 1.4e-38 164.9 118 69.5
Hma1.2p1_0685F.1_g203270 Hydrangea macrophylla HOM05D002214 ORTHO05D007367 7.1e-38 162.5 150 52.0
Lj9A641T67 Lonicera japonica HOM05D002214 ORTHO05D007367 7.1e-38 162.5 279 34.8
Hund16633 Selenicereus undatus HOM05D002214 ORTHO05D007367 1.6e-37 161.4 167 49.1
SMO137G0282 Selaginella moellendorffii HOM05D002214 ORTHO05D007367 6.2e-34 149.4 364 31.0
SEGI_30351 Sequoiadendron giganteum HOM05D002214 ORTHO05D007367 2.0e-32 144.4 140 47.9
FAN06G4994 Fragaria x ananassa HOM05D002214 ORTHO05D007367 8.4e-31 139.0 154 46.8
Thecc.01G405700 Theobroma cacao HOM05D002214 ORTHO05D007367 1.6e-29 134.8 113 56.6
CBR_g46897 Chara braunii HOM05D002214 ORTHO05D007367 4.6e-29 133.3 389 26.2
Mapoly0009s0234 Marchantia polymorpha HOM05D002214 ORTHO05D007367 3.6e-26 123.6 304 28.0
Thecc.01G405800 Theobroma cacao HOM05D002214 ORTHO05D007367 6.4e-23 112.8 83 65.1
SEGI_07097 Sequoiadendron giganteum HOM05D002214 ORTHO05D007367 1.0e-20 105.5 135 38.5
Duzib133G0745 Durio zibethinus HOM05D002214 ORTHO05D007367 2.3e-20 104.4 69 65.2
Oeu016638.1 Olea europaea HOM05D002214 ORTHO05D007367 1.7e-15 88.2 103 42.7
Hma1.2p1_0685F.1_g203250 Hydrangea macrophylla HOM05D002214 ORTHO05D007367 1.0e-12 79.0 104 36.5
FAN27G0150 Fragaria x ananassa HOM05D002214 ORTHO05D007367 4.0e-09 67.0 139 30.9
FAN27G0866 Fragaria x ananassa HOM05D002214 ORTHO05D007367 2.6e-08 64.3 75 42.7
Lj9C641T18 Lonicera japonica HOM05D002214 ORTHO05D007367 1.3e-07 62.0 95 38.9
Peaxi162Scf00015g00841 Petunia axillaris HOM05D003769 ORTHO05D004521 1.4e-06 58.5 270 23.3


User provided reference genes

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