Gene: AT3G49910

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G49910
  • Transcript Identifier AT3G49910.1
  • Gene Type Coding gene
  • Location Chr3 : 18504311-18504751 : positive

Gene Family Information

  • ID HOM05D002190
  • #Genes/#Species 306/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G49910.1
  • uniprot P51414

Descriptions

  • Description Translation protein SH3-like family protein
  • Computational description Translation protein SH3-like family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: response to cold, translation; LOCATED IN: in 8 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translation protein SH3-like (InterPro:IPR008991), Ribosomal protein L26, eukaryotic/archaeal (InterPro:IPR005756), Ribosomal protein L24, SH3-like (InterPro:IPR014723), Ribosomal protein L24/L26, conserved site (InterPro:IPR005825), KOW (InterPro:IPR005824); BEST Arabidopsis thaliana protein match is: Translation protein SH3-like family protein (TAIR:AT5G67510.1); Has 1113 Blast hits to 1113 proteins in 414 species: Archae - 314; Bacteria - 5; Metazoa - 375; Fungi - 141; Plants - 96; Viruses - 0; Other Eukaryotes - 182 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009409
IEP
GOA Databaseresponse to cold
GO:0006412
IEA
GOA Databasetranslation
GO:0006412
IEA
InterProtranslation
GO:0002181
IBA
Gene Ontologycytoplasmic translation1
GO:0042273
IBA
Gene Ontologyribosomal large subunit biogenesis1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003735
IDA
IEA
GOA Databasestructural constituent of ribosome
GO:0003735
IBA
Gene Ontologystructural constituent of ribosome1
GO:0003735
IEA
InterProstructural constituent of ribosome
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IBA
Gene OntologyRNA binding1
GO:0003723
IEA
InterProRNA binding
GO:0003729
IDA, HDA
Gene OntologymRNA binding2 3

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0022625
IDA
GOA Databasecytosolic large ribosomal subunit
GO:0022625
HDA
IBA
Gene Ontologycytosolic large ribosomal subunit1 4
GO:0005774
IDA
GOA Databasevacuolar membrane
GO:0005730
IDA
GOA Databasenucleolus
GO:0005730
HDA
Gene Ontologynucleolus5
GO:0005886
IDA
GOA Databaseplasma membrane
GO:0022626
IDA
GOA Databasecytosolic ribosome
GO:0022626
HDA
Gene Ontologycytosolic ribosome6
GO:0005829
IDA
GOA Databasecytosol
GO:0005829
HDA
Gene Ontologycytosol7
GO:0005634
IDA
GOA Databasenucleus
GO:0005634
HDA
Gene Ontologynucleus8
GO:0005840
IEA
GOA Databaseribosome
GO:0015934
IEA
GOA Databaselarge ribosomal subunit
GO:0015934
IEA
InterProlarge ribosomal subunit
GO:0042788
IDA
GOA Databasepolysomal ribosome
GO:0005794
RCA
Gene OntologyGolgi apparatus9
GO:0000325
HDA
Gene Ontologyplant-type vacuole10

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR005824 KOW
IPR008991 Translation protein SH3-like domain superfamily
IPR014722 Ribosomal protein L2, domain 2
IPR041988 Ribosomal protein L26/L24, KOW domain
IPR005756 Ribosomal protein L26/L24, eukaryotic/archaeal
Mapman id Description
17.1.2.1.26 Protein biosynthesis.ribosome biogenesis.large ribosomal subunit (LSU).LSU proteome.component RPL26