Gene: AT3G49640

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G49640
  • Transcript Identifier AT3G49640.1
  • Gene Type Coding gene
  • Location Chr3 : 18400480-18402809 : negative

Gene Family Information

  • ID HOM05D007023
  • #Genes/#Species 114/92
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G49640.1
  • uniprot F4IY04

Descriptions

  • Description Aldolase-type TIM barrel family protein
  • Computational description Aldolase-type TIM barrel family protein; FUNCTIONS IN: tRNA dihydrouridine synthase activity, FAD binding, catalytic activity; INVOLVED IN: regulation of nitrogen utilization, oxidation reduction, tRNA processing, metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), tRNA-dihydrouridine synthase (InterPro:IPR001269), tRNA-dihydrouridine synthase, conserved site (InterPro:IPR018517); BEST Arabidopsis thaliana protein match is: FMN-linked oxidoreductases superfamily protein (TAIR:AT5G67220.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0002943
IBA
Gene OntologytRNA dihydrouridine synthesis1
GO:0008033
IEA
GOA DatabasetRNA processing

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0017150
IBA
IEA
Gene OntologytRNA dihydrouridine synthase activity1
GO:0050660
IEA
Gene Ontologyflavin adenine dinucleotide binding
GO:0016491
IEA
GOA Databaseoxidoreductase activity
GO:0003824
IEA
GOA Databasecatalytic activity
GO:0003824
IEA
InterProcatalytic activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISM
Gene Ontologynucleus
GO:0009507
ISM
Gene Ontologychloroplast
GO:0005737
IBA
Gene Ontologycytoplasm1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR013785 Aldolase-type TIM barrel
IPR035587 DUS-like, FMN-binding domain
Mapman id Description
16.5.4.1 RNA processing.RNA modification.dihydrouridylation.tRNA dihydrouridine synthase