Gene: AT3G45950

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G45950
  • Transcript Identifier AT3G45950.1
  • Gene Type Coding gene
  • Location Chr3 : 16889461-16890618 : negative

Gene Family Information

  • ID HOM05D002351
  • #Genes/#Species 289/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G45950.1
  • uniprot Q9LZT6

Descriptions

  • Description Pre-mRNA splicing Prp18-interacting factor
  • Computational description Pre-mRNA splicing Prp18-interacting factor; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, CCHC-type (InterPro:IPR001878), Pre-mRNA splicing Prp18-interacting factor (InterPro:IPR021715); BEST Arabidopsis thaliana protein match is: Pre-mRNA splicing Prp18-interacting factor (TAIR:AT1G65660.1); Has 528 Blast hits to 525 proteins in 189 species: Archae - 0; Bacteria - 0; Metazoa - 260; Fungi - 133; Plants - 63; Viruses - 0; Other Eukaryotes - 72 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008380
IEA
GOA DatabaseRNA splicing
GO:0008380
IBA
Gene OntologyRNA splicing1
GO:0000398
IEA
GOA DatabasemRNA splicing, via spliceosome
GO:0000398
IEA
InterPromRNA splicing, via spliceosome
GO:0006397
IEA
GOA DatabasemRNA processing

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000386
IEA
GOA Databasesecond spliceosomal transesterification activity
GO:0000386
IEA
InterProsecond spliceosomal transesterification activity
GO:0030628
IEA
GOA Databasepre-mRNA 3'-splice site binding
GO:0030628
IEA
InterPropre-mRNA 3'-splice site binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus
GO:0005681
IEA
GOA Databasespliceosomal complex
GO:0005681
IBA
Gene Ontologyspliceosomal complex1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR021715 Pre-mRNA-splicing factor SLU7 domain
IPR039974 Pre-mRNA-splicing factor SLU7
Mapman id Description
16.2.6.9 RNA processing.pre-mRNA splicing.spliceosome-associated non-snRNP factor activities.splicing factor (SLU7)