Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G42860 Arabidopsis thaliana HOM05D008124 ORTHO05D004072 3.6e-163 578.6 373 100.0
AL5G21140 Arabidopsis lyrata HOM05D008124 ORTHO05D004072 5.2e-138 495.0 373 82.0
Carub.0005s0890 Capsella rubella HOM05D008124 ORTHO05D004072 1.8e-122 443.4 273 80.6
Thhalv10013799m.g Eutrema salsugineum HOM05D008124 ORTHO05D004072 6.3e-120 434.9 279 76.3
Sp6g17920 Schrenkiella parvula HOM05D008124 ORTHO05D004072 1.1e-119 434.1 280 75.4
CARHR152360 Cardamine hirsuta HOM05D008124 ORTHO05D004072 3.6e-115 419.1 269 77.7
C09p47180 Brassica napus HOM05D008124 ORTHO05D004072 7.8e-110 401.4 278 73.0
A10p13280 Brassica napus HOM05D008124 ORTHO05D004072 1.0e-109 401.0 276 72.1
BolC9t57572H Brassica oleracea HOM05D008124 ORTHO05D004072 2.3e-109 399.8 278 72.7
BraA10t43425Z Brassica rapa HOM05D008124 ORTHO05D004072 3.6e-107 392.5 279 71.0
Aa31LG4G13260 Aethionema arabicum HOM05D008124 ORTHO05D004072 1.6e-99 367.1 286 65.7
THA.LOC104810998 Tarenaya hassleriana HOM05D008124 ORTHO05D004072 3.3e-92 342.8 293 60.1
GSVIVG01018616001 Vitis vinifera HOM05D008124 ORTHO05D004072 2.4e-63 246.9 249 50.2
TWI60G0051 Tripterygium wilfordii HOM05D008124 ORTHO05D004072 1.3e-61 241.1 284 46.8
Manes.09G074700 Manihot esculenta HOM05D008124 ORTHO05D004072 1.6e-59 234.2 272 48.9
TAR627G0754 Trochodendron aralioides HOM05D008124 ORTHO05D004072 2.4e-58 230.3 288 45.5
CANSAT64G0620 Cannabis sativa HOM05D008124 ORTHO05D004072 5.8e-57 225.7 290 45.9
Prupe.3G190200 Prunus persica HOM05D008124 ORTHO05D004072 2.2e-56 223.8 316 41.5
Potri.001G318100 Populus trichocarpa HOM05D008124 ORTHO05D004072 3.8e-56 223.0 294 41.5
RcHm_v2.0_Chr2g0154211 Rosa chinensis HOM05D008124 ORTHO05D004072 4.2e-55 219.5 182 56.0
Rhsim07G0073400 Rhododendron simsii HOM05D008124 ORTHO05D004072 9.3e-55 218.4 290 42.1
PGR004G0249 Punica granatum HOM05D008124 ORTHO05D004072 4.6e-54 216.1 182 54.4
MD17G1125500 Malus domestica HOM05D008124 ORTHO05D004072 6.0e-54 215.7 305 41.6
Sabra16G0201300 Salix brachista HOM05D008124 ORTHO05D004072 3.0e-53 213.4 280 41.1
FAN14G4038 Fragaria x ananassa HOM05D000027 ORTHO05D004072 5.1e-53 212.6 227 46.7
PGSC0003DMG400027518 Solanum tuberosum HOM05D008124 ORTHO05D004072 6.7e-53 212.2 296 41.6
FAN02G4088 Fragaria x ananassa HOM05D008124 ORTHO05D004072 8.7e-53 211.8 183 53.6
Sed0004202 Sechium edule HOM05D008124 ORTHO05D004072 1.1e-52 211.5 284 44.7
Eucgr.K01332 Eucalyptus grandis HOM05D008124 ORTHO05D004072 4.3e-52 209.5 175 52.6
FvH4_6g39844 Fragaria vesca HOM05D008124 ORTHO05D004072 1.3e-51 208.0 192 51.0
Sopen01g040750 Solanum pennellii HOM05D008124 ORTHO05D004072 2.8e-51 206.8 273 42.1
CAN.G134.65 Capsicum annuum HOM05D008124 ORTHO05D004072 4.8e-51 206.1 242 45.0
Solyc01g097070.4 Solanum lycopersicum HOM05D008124 ORTHO05D004072 1.4e-50 204.5 272 40.8
Cfa000684 Carpinus fangiana HOM05D008124 ORTHO05D004072 1.1e-47 194.9 252 44.4
MBI02_g36352_MAGBIO Magnolia biondii HOM05D008124 ORTHO05D004072 9.4e-47 191.8 259 42.9
Os03g0786500 Oryza sativa ssp. japonica HOM05D008124 ORTHO05D004072 2.1e-46 190.7 273 39.2
Nn4g26556 Nelumbo nucifera HOM05D008124 ORTHO05D004072 2.3e-45 187.2 249 45.8
Zm00001eb059980 Zea mays HOM05D008124 ORTHO05D004072 6.7e-45 185.7 313 40.6
ClCG07G010840 Citrullus lanatus HOM05D008124 ORTHO05D004072 3.7e-43 179.9 231 42.0
PSO541G0277 Papaver somniferum HOM05D008124 ORTHO05D004072 9.1e-42 175.3 230 42.6
Sed0023600 Sechium edule HOM05D008124 ORTHO05D004072 1.5e-41 174.5 161 49.1
Nitab4.5_0005905g0010 Nicotiana tabacum HOM05D008124 ORTHO05D004072 7.7e-41 172.2 233 44.2
HPP92_017732 Vanilla planifolia HOM05D008124 ORTHO05D004072 2.9e-40 170.2 298 38.6
Mapoly0141s0028 Marchantia polymorpha HOM05D008124 ORTHO05D004072 6.5e-40 169.1 261 36.0
Haze_06124 Corylus avellana HOM05D008124 ORTHO05D004072 7.2e-39 165.6 212 43.4
Nitab4.5_0002247g0100 Nicotiana tabacum HOM05D008124 ORTHO05D004072 1.8e-37 161.0 229 42.8
Duzib116G0777 Durio zibethinus HOM05D008124 ORTHO05D004072 1.3e-35 154.8 273 38.8
AagrBONN_evm.TU.Sc2ySwM_228.5614 Anthoceros agrestis HOM05D008124 ORTHO05D004072 5.3e-34 149.4 217 41.0
Dinv20269 Davidia involucrata HOM05D008124 ORTHO05D004072 1.2e-33 148.3 215 41.4
CsaV3_4G007470 Cucumis sativus L. HOM05D008124 ORTHO05D004072 7.7e-33 145.6 178 43.8
Gohir.A06G110400 Gossypium hirsutum HOM05D008124 ORTHO05D004072 8.5e-32 142.1 265 37.7
CDE02G3354 Ceratophyllum demersum HOM05D008124 ORTHO05D004072 7.2e-31 139.0 200 41.0
PSO170G6446 Papaver somniferum HOM05D008124 ORTHO05D004072 2.7e-30 137.1 182 40.1
Peaxi162Scf00647g00014 Petunia axillaris HOM05D008124 ORTHO05D004072 8.8e-29 132.1 125 49.6
AUR62015176 Chenopodium quinoa HOM05D008124 ORTHO05D004072 1.3e-27 128.3 282 34.8
AUR62017629 Chenopodium quinoa HOM05D008124 ORTHO05D004072 3.7e-27 126.7 285 34.4
HPP92_017701 Vanilla planifolia HOM05D008124 ORTHO05D004072 4.8e-27 126.3 180 40.6
TAR374G0633 Trochodendron aralioides HOM05D007742 ORTHO05D004072 7.0e-26 122.5 166 39.2
Ah.01g013150 Amaranthus hybridus HOM05D008124 ORTHO05D004072 2.6e-25 120.6 306 31.4
EL10Ac9g22884 Beta vulgaris HOM05D008124 ORTHO05D004072 4.5e-25 119.8 343 29.4
Aqoxy5G03036 Aquilegia oxysepala HOM05D007742 ORTHO05D004072 3.8e-24 116.7 186 37.6
Nn4g22099 Nelumbo nucifera HOM05D007742 ORTHO05D004072 3.8e-24 116.7 176 38.6
Sc16g0003130 Simmondsia chinensis HOM05D007742 ORTHO05D004072 3.3e-20 103.6 134 40.3
Dinv33270 Davidia involucrata HOM05D007742 ORTHO05D004072 7.5e-20 102.4 104 44.2
Thhalv10013728m.g Eutrema salsugineum HOM05D009880 ORTHO05D004072 9.7e-20 102.1 113 43.4
Potri.T125504 Populus trichocarpa HOM05D007742 ORTHO05D004072 2.2e-19 100.9 118 39.0
Sp6g30080 Schrenkiella parvula HOM05D009880 ORTHO05D004072 3.7e-19 100.1 133 39.1
Potri.009G112676 Populus trichocarpa HOM05D007742 ORTHO05D004072 8.2e-19 99.0 118 38.1
Potri.T125604 Populus trichocarpa HOM05D007742 ORTHO05D004072 1.1e-18 98.6 118 38.1
CiPaw.15G155500 Carya illinoinensis HOM05D007742 ORTHO05D004072 1.4e-18 98.2 171 33.9
EL10As2g23272 Beta vulgaris HOM05D007742 ORTHO05D004072 1.8e-18 97.8 115 38.3
Aa31LG2G11760 Aethionema arabicum HOM05D009880 ORTHO05D004072 2.4e-18 97.4 122 40.2
THA.LOC104823128 Tarenaya hassleriana HOM05D009880 ORTHO05D004072 2.4e-18 97.4 156 35.3
Ciclev10014656m.g Citrus clementina HOM05D007742 ORTHO05D004072 7.0e-18 95.9 116 37.9
PSO170G3234 Papaver somniferum HOM05D007742 ORTHO05D004072 2.7e-17 94.0 117 38.5
BraA09t37545Z Brassica rapa HOM05D009880 ORTHO05D004072 3.5e-17 93.6 121 38.8
Cfa007153 Carpinus fangiana HOM05D007742 ORTHO05D004072 7.7e-17 92.4 115 45.2
Sabra09G0086100 Salix brachista HOM05D007742 ORTHO05D004072 7.7e-17 92.4 143 34.3
PSO357G0543 Papaver somniferum HOM05D007742 ORTHO05D004072 1.0e-16 92.0 117 37.6
A03p06280 Brassica napus HOM05D009880 ORTHO05D004072 1.3e-16 91.7 116 39.7
C09p24280 Brassica napus HOM05D009880 ORTHO05D004072 2.2e-16 90.9 121 38.8
BolC9t55345H Brassica oleracea HOM05D009880 ORTHO05D004072 2.2e-16 90.9 121 38.8
BraA03t09959Z Brassica rapa HOM05D009880 ORTHO05D004072 2.2e-16 90.9 116 39.7
BcaB07g31107 Brassica carinata HOM05D009880 ORTHO05D004072 2.9e-16 90.5 121 39.7
CARHR284540 Cardamine hirsuta HOM05D009880 ORTHO05D004072 3.8e-16 90.1 109 38.5
Ciclev10014788m.g Citrus clementina HOM05D007742 ORTHO05D004072 3.8e-16 90.1 166 30.1
QL02p069032 Quercus lobata HOM05D007742 ORTHO05D004072 3.8e-16 90.1 116 38.8
BcaC04g22033 Brassica carinata HOM05D009880 ORTHO05D004072 8.5e-16 89.0 121 38.0
Atru.chr6.2712 Acer truncatum HOM05D007742 ORTHO05D004072 1.5e-15 88.2 148 38.5
BcaB01g05328 Brassica carinata HOM05D009880 ORTHO05D004072 1.5e-15 88.2 116 38.8
C03p07260 Brassica napus HOM05D009880 ORTHO05D004072 1.5e-15 88.2 116 38.8
A09p19280 Brassica napus HOM05D009880 ORTHO05D004072 1.9e-15 87.8 117 38.5
Sabra09G0086000 Salix brachista HOM05D007742 ORTHO05D004072 1.9e-15 87.8 113 39.8
Gorai.010G143700 Gossypium raimondii HOM05D008124 ORTHO05D004072 4.2e-15 86.7 124 48.4
Carub.0006s1211 Capsella rubella HOM05D009880 ORTHO05D004072 7.2e-15 85.9 113 38.9
Manes.04G094400 Manihot esculenta HOM05D007742 ORTHO05D004072 7.2e-15 85.9 135 31.9
AL6G24570 Arabidopsis lyrata HOM05D009880 ORTHO05D004072 4.7e-14 83.2 121 38.0
Ah.03g136430 Amaranthus hybridus HOM05D007742 ORTHO05D004072 1.4e-13 81.6 115 36.5
Prupe.3G314400 Prunus persica HOM05D007742 ORTHO05D004072 5.2e-13 79.7 134 34.3
AUR62037803 Chenopodium quinoa HOM05D007742 ORTHO05D004072 2.0e-12 77.8 132 34.8
QL02p068827 Quercus lobata HOM05D007742 ORTHO05D004072 2.6e-12 77.4 142 36.6
Aa31LG2G11790 Aethionema arabicum HOM05D009880 ORTHO05D004072 9.8e-12 75.5 118 35.6
Lj1g0006134 Lotus japonicus HOM05D007742 ORTHO05D004072 2.2e-11 74.3 109 36.7
PGR142G3827 Punica granatum HOM05D007742 ORTHO05D004072 2.2e-11 74.3 165 30.3
Actinidia37712 Actinidia chinensis HOM05D007742 ORTHO05D004072 3.7e-11 73.6 127 35.4
Lj1g0016784 Lotus japonicus HOM05D007742 ORTHO05D001134 4.8e-11 73.2 110 37.3
Lj2g0008812 Lotus japonicus HOM05D007742 ORTHO05D004072 6.3e-11 72.8 110 37.3
QL02p069084 Quercus lobata HOM05D007742 ORTHO05D004072 1.8e-10 71.2 103 34.0
EL10As2g23251 Beta vulgaris HOM05D007742 ORTHO05D004072 3.1e-10 70.5 120 30.8
CDE06G0867 Ceratophyllum demersum HOM05D007742 ORTHO05D004072 3.1e-10 70.5 47 57.4
Haze_16000 Corylus avellana HOM05D013106 ORTHO05D017812 4.1e-10 70.1 165 27.9
Ca_08225_v3 Cicer arietinum L. HOM05D007742 ORTHO05D004072 5.4e-10 69.7 112 33.0
Carub.0002s0844 Capsella rubella HOM05D009880 ORTHO05D004072 1.6e-09 68.2 56 50.0
Glyma.19G105500 Glycine max HOM05D007742 ORTHO05D004072 2.0e-09 67.8 110 36.4
MSTRG.25687 Avicennia marina HOM05D007742 ORTHO05D004072 2.3e-08 64.3 137 29.9
PRCOL_00006794 Prasinoderma coloniale HOM05D008124 ORTHO05D004072 2.3e-08 64.3 100 34.0
SGA_v2.0_scaffold305G47989 Striga asiatica HOM05D007742 ORTHO05D004072 2.9e-08 63.9 109 35.8
arahy.Tifrunner.gnm1.ann1.T3P4RE Arachis hypogaea HOM05D007742 ORTHO05D004072 3.8e-08 63.5 107 36.4
arahy.Tifrunner.gnm1.ann1.U642C8 Arachis hypogaea HOM05D007742 ORTHO05D004072 3.8e-08 63.5 117 35.0
SEGI_07514 Sequoiadendron giganteum HOM05D008124 ORTHO05D004072 3.8e-08 63.5 58 46.6
AT5G13920 Arabidopsis thaliana HOM05D009880 ORTHO05D004072 5.0e-08 63.2 44 54.5
CSS0006654 Camellia sinensis var. sinensis HOM05D008124 ORTHO05D004072 1.1e-07 62.0 38 63.2
CSS0017436 Camellia sinensis var. sinensis HOM05D008124 ORTHO05D004072 1.1e-07 62.0 38 63.2
Aa31LG2G11730 Aethionema arabicum HOM05D009880 ORTHO05D004072 1.9e-07 61.2 48 54.2
AL1G65420 Arabidopsis lyrata HOM05D009880 ORTHO05D004072 1.9e-07 61.2 137 31.4
AT1G54930 Arabidopsis thaliana HOM05D009880 ORTHO05D004072 1.9e-07 61.2 48 50.0
Duzib138G1433 Durio zibethinus HOM05D018961 ORTHO05D004072 4.2e-07 60.1 101 35.6
Dinv12439 Davidia involucrata HOM05D007742 ORTHO05D004072 5.5e-07 59.7 63 39.7
Lsat_1_v5_gn_4_63641 Lactuca sativa HOM05D010091 ORTHO05D012356 5.5e-07 59.7 43 62.8
PGSC0003DMG400008721 Solanum tuberosum HOM05D009408 ORTHO05D000309 7.2e-07 59.3 60 41.7
Solyc03g096303.1 Solanum lycopersicum HOM05D009408 ORTHO05D000309 9.5e-07 58.9 42 54.8
Solyc09g072730.2 Solanum lycopersicum HOM05D009408 ORTHO05D000309 9.5e-07 58.9 62 40.3
Solyc10g055427.1 Solanum lycopersicum HOM05D009408 ORTHO05D000309 9.5e-07 58.9 62 40.3
Solyc10g080784.1 Solanum lycopersicum HOM05D008169 ORTHO05D004497 9.5e-07 58.9 62 40.3
Cc07_g01390 Coffea canephora HOM05D007742 ORTHO05D004072 1.2e-06 58.5 38 55.3
Cc07_g01400 Coffea canephora HOM05D007742 ORTHO05D004072 1.2e-06 58.5 38 55.3
Lsat_1_v5_gn_2_55560 Lactuca sativa HOM05D010091 ORTHO05D012356 1.2e-06 58.5 43 60.5
Lsat_1_v5_gn_0_12581 Lactuca sativa HOM05D010091 ORTHO05D012356 1.6e-06 58.2 43 60.5
Lsat_1_v5_gn_3_18240 Lactuca sativa HOM05D010091 ORTHO05D012356 1.6e-06 58.2 43 60.5
Lsat_1_v5_gn_7_32160 Lactuca sativa HOM05D010091 ORTHO05D012356 1.6e-06 58.2 43 60.5
Lsat_1_v5_gn_7_32200 Lactuca sativa HOM05D010091 ORTHO05D012356 1.6e-06 58.2 43 60.5
PGSC0003DMG400041825 Solanum tuberosum HOM05D009408 ORTHO05D000309 2.1e-06 57.8 62 38.7
Mapoly0113s0011 Marchantia polymorpha HOM05D002182 ORTHO05D004671 2.8e-06 57.4 258 24.8
Hund19588 Selenicereus undatus HOM05D007742 ORTHO05D004072 2.8e-06 57.4 83 30.1
GSVIVG01032966001 Vitis vinifera HOM05D007742 ORTHO05D004072 2.8e-06 57.4 77 36.4
Lsat_1_v5_gn_2_74380 Lactuca sativa HOM05D010091 ORTHO05D012356 3.6e-06 57.0 43 60.5
CARHR199510 Cardamine hirsuta HOM05D009880 ORTHO05D004072 4.7e-06 56.6 44 50.0
Lsat_1_v5_gn_1_98500 Lactuca sativa HOM05D010091 ORTHO05D012356 4.7e-06 56.6 43 55.8
Lsat_1_v5_gn_3_56760 Lactuca sativa HOM05D010091 ORTHO05D000529 4.7e-06 56.6 43 55.8
Solyc12g062733.2 Solanum lycopersicum HOM05D009408 ORTHO05D000309 4.7e-06 56.6 62 38.7
CSS0002164 Camellia sinensis var. sinensis HOM05D008124 ORTHO05D004072 6.1e-06 56.2 59 39.0
CSS0011273 Camellia sinensis var. sinensis HOM05D008124 ORTHO05D004072 6.1e-06 56.2 59 39.0
CAN.G1459.18 Capsicum annuum HOM05D009408 ORTHO05D000309 6.1e-06 56.2 46 52.2
Lsat_1_v5_gn_9_80080 Lactuca sativa HOM05D010091 ORTHO05D012356 6.1e-06 56.2 43 55.8


User provided reference genes

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