Gene: AT3G25520

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G25520
  • Transcript Identifier AT3G25520.1
  • Gene Type Coding gene
  • Location Chr3 : 9269573-9271327 : negative

Gene Family Information

  • ID HOM05D002050
  • #Genes/#Species 324/94
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G25520.1
  • symbol ATL5
  • Alias OLI5,OLIGOCELLULA 5,PGY3,PIGGYBACK3,RPL5A,RIBOSOMAL PROTEIN L5 A
  • uniprot Q8LBI1

Descriptions

  • Description ribosomal protein L5
  • Computational description ribosomal protein L5 (ATL5); FUNCTIONS IN: structural constituent of ribosome, 5S rRNA binding; INVOLVED IN: in 7 processes; LOCATED IN: in 10 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L5, eukaryotic (InterPro:IPR005485), Ribosomal protein L18/L5 (InterPro:IPR005484); BEST Arabidopsis thaliana protein match is: ribosomal protein L5 B (TAIR:AT5G39740.2); Has 1450 Blast hits to 1449 proteins in 545 species: Archae - 345; Bacteria - 5; Metazoa - 620; Fungi - 157; Plants - 121; Viruses - 0; Other Eukaryotes - 202 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000027
IBA
Gene Ontologyribosomal large subunit assembly1
GO:0006412
IEA
Gene Ontologytranslation
GO:0006412
IEA
InterProtranslation
GO:0006913
TAS
Gene Ontologynucleocytoplasmic transport2
GO:0009955
IMP, IGI
Gene Ontologyadaxial/abaxial pattern specification3 4
GO:0009965
IMP
Gene Ontologyleaf morphogenesis3
GO:0010015
IMP
Gene Ontologyroot morphogenesis5
GO:0051301
IMP
Gene Ontologycell division5

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008097
IDA
IBA
IEA
Gene Ontology5S rRNA binding1 2
GO:0008097
IEA
InterPro5S rRNA binding
GO:0003735
IDA
GOA Databasestructural constituent of ribosome
GO:0003735
IBA
IEA
Gene Ontologystructural constituent of ribosome1
GO:0003735
IEA
InterProstructural constituent of ribosome
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0019843
IEA
GOA DatabaserRNA binding
GO:0003729
IDA
Gene OntologymRNA binding6

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005886
IDA
GOA Databaseplasma membrane
GO:0042788
IDA
GOA Databasepolysomal ribosome
GO:0005654
IEA
GOA Databasenucleoplasm
GO:0005654
IDA
Gene Ontologynucleoplasm3
GO:0005730
IEA
GOA Databasenucleolus
GO:0005730
IDA
Gene Ontologynucleolus2
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005737
IDA
ISM
Gene Ontologycytoplasm2
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IDA
ISM
Gene Ontologynucleus2
GO:0022625
IDA
GOA Databasecytosolic large ribosomal subunit
GO:0022625
HDA
IBA
Gene Ontologycytosolic large ribosomal subunit1 7
GO:0005773
IDA
GOA Databasevacuole
GO:0005773
HDA
Gene Ontologyvacuole8
GO:0009507
IDA
GOA Databasechloroplast
GO:0009507
HDA
Gene Ontologychloroplast9
GO:0022626
IDA
GOA Databasecytosolic ribosome
GO:0022626
HDA
Gene Ontologycytosolic ribosome10
GO:0005829
IDA
GOA Databasecytosol
GO:0005829
HDA
Gene Ontologycytosol11
GO:0005840
IEA
GOA Databaseribosome
GO:0005840
IEA
InterProribosome
GO:0005794
RCA
Gene OntologyGolgi apparatus12

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR005485 Ribosomal protein L5 eukaryotic/L18 archaeal
IPR025607 Ribosomal protein L5 eukaryotic/L18 archaeal, C-terminal
Mapman id Description
17.1.2.1.3 Protein biosynthesis.ribosome biogenesis.large ribosomal subunit (LSU).LSU proteome.component RPL5