Gene: AT3G16940

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G16940
  • Transcript Identifier AT3G16940.1
  • Gene Type Coding gene
  • Location Chr3 : 5781959-5785985 : positive

Gene Family Information

  • ID HOM05D000660
  • #Genes/#Species 863/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G16940.1
  • uniprot Q9LSP8

Descriptions

  • Description calmodulin-binding transcription activator
  • Computational description calmodulin binding;transcription regulators; FUNCTIONS IN: calmodulin binding, transcription regulator activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), CG-1 (InterPro:IPR005559), Cell surface receptor IPT/TIG (InterPro:IPR002909), IQ calmodulin-binding region (InterPro:IPR000048), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: calmodulin binding;transcription regulators (TAIR:AT4G16150.1); Has 5766 Blast hits to 3807 proteins in 309 species: Archae - 13; Bacteria - 199; Metazoa - 3382; Fungi - 247; Plants - 659; Viruses - 23; Other Eukaryotes - 1243 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0045893
ISO
PLAZA Integrative Orthologypositive regulation of transcription, DNA-templated Os07g0490200
GO:0006357
IBA
Gene Ontologyregulation of transcription by RNA polymerase II1
GO:0009651
IMP, IGI
Gene Ontologyresponse to salt stress2
GO:0006355
TAS
Gene Ontologyregulation of transcription, DNA-templated3

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003712
IBA
Gene Ontologytranscription coregulator activity1
GO:0043565
ISO
PLAZA Integrative Orthologysequence-specific DNA binding Os07g0490200
GO:0005515
IEA
InterProprotein binding
GO:0003677
IEA
Gene OntologyDNA binding
GO:0003677
IEA
InterProDNA binding
GO:0005516
IEA
GOA Databasecalmodulin binding
GO:0005516
IDA
Gene Ontologycalmodulin binding3
GO:0003690
IBA
Gene Ontologydouble-stranded DNA binding1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM, IBA
Gene Ontologynucleus1
GO:0005576
ISM
Gene Ontologyextracellular region

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR005559 CG-1 DNA-binding domain
IPR000048 IQ motif, EF-hand binding site
IPR013783 Immunoglobulin-like fold
IPR014756 Immunoglobulin E-set
IPR036770 Ankyrin repeat-containing domain superfamily
IPR020683 Ankyrin repeat-containing domain
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR002909 IPT domain
IPR002110 Ankyrin repeat
Mapman id Description
15.5.26 RNA biosynthesis.transcriptional regulation.transcription factor (CAMTA)