Gene: AT3G13560

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G13560
  • Transcript Identifier AT3G13560.1
  • Gene Type Coding gene
  • Location Chr3 : 4425484-4427284 : negative

Gene Family Information

  • ID HOM05D000020
  • #Genes/#Species 6649/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G13560.1
  • uniprot Q94CD8

Descriptions

  • Description O-Glycosyl hydrolases family 17 protein
  • Computational description O-Glycosyl hydrolases family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: O-Glycosyl hydrolases family 17 protein (TAIR:AT2G01630.1); Has 2864 Blast hits to 2791 proteins in 151 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 51; Plants - 2798; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005975
IEA
Gene Ontologycarbohydrate metabolic process
GO:0005975
IEA
InterProcarbohydrate metabolic process
GO:0008152
IEA
GOA Databasemetabolic process
GO:0006952
IEA
GOA Databasedefense response

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004553
IEA
GOA Databasehydrolase activity, hydrolyzing O-glycosyl compounds
GO:0004553
IEA
InterProhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0016798
IEA
GOA Databasehydrolase activity, acting on glycosyl bonds
GO:0042973
IEA
Gene Ontologyglucan endo-1,3-beta-D-glucosidase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005886
IDA
IEA
GOA Databaseplasma membrane
GO:0005886
HDA
Gene Ontologyplasma membrane1
GO:0031225
IEA
GOA Databaseanchored component of membrane
GO:0031225
TAS
Gene Ontologyanchored component of membrane2
GO:0016020
IEA
GOA Databasemembrane
GO:0005576
ISM
Gene Ontologyextracellular region
GO:0046658
IDA
IBA
Gene Ontologyanchored component of plasma membrane3 4
GO:0005829
HDA
Gene Ontologycytosol5

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR044965 Glycoside hydrolase family 17, plant
IPR000490 Glycoside hydrolase family 17
IPR012946 X8 domain
IPR017853 Glycoside hydrolase superfamily
Mapman id Description
21.7.2 Cell wall organisation.callose.regulatory beta-1,3 glucanase (pdBG)