Gene: AT3G13445

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G13445
  • Transcript Identifier AT3G13445.1
  • Gene Type Coding gene
  • Location Chr3 : 4380317-4381869 : positive

Gene Family Information

  • ID HOM05D002140
  • #Genes/#Species 313/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G13445.1
  • symbol TBP1
  • Alias TFIID-1,TRANSCRIPTION FACTOR IID-1
  • uniprot P28147

Descriptions

  • Description TATA binding protein 1
  • Computational description TATA binding protein 1 (TBP1); FUNCTIONS IN: RNA polymerase II transcription factor activity, binding, DNA binding; INVOLVED IN: transcription initiation from RNA polymerase II promoter, regulation of transcription, DNA-dependent; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TATA-box binding (InterPro:IPR000814), Beta2-adaptin/TATA-box binding, C-terminal (InterPro:IPR012295), Transcription factor TFIID, C-terminal/DNA glycosylase, N-terminal (InterPro:IPR012294); BEST Arabidopsis thaliana protein match is: TATA binding protein 2 (TAIR:AT1G55520.2); Has 2082 Blast hits to 1578 proteins in 405 species: Archae - 722; Bacteria - 0; Metazoa - 573; Fungi - 191; Plants - 155; Viruses - 0; Other Eukaryotes - 441 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006352
IBA
IEA
Gene OntologyDNA-templated transcription, initiation1
GO:0006352
IEA
InterProDNA-templated transcription, initiation
GO:0006366
IEA
GOA Databasetranscription by RNA polymerase II

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IPI
Gene Ontologyprotein binding2
GO:0016251
IBA
Gene OntologyRNA polymerase II general transcription initiation factor activity1
GO:0140223
IBA
Gene Ontologygeneral transcription initiation factor activity1
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003677
IEA
InterProDNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IDA
Gene Ontologynucleus2

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR033710 TATA-box binding protein, eukaryotic
IPR000814 TATA-box binding protein
IPR012295 TBP domain superfamily
Mapman id Description
15.3.4.2.1 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.TFIId complex.TATA-box-binding component
15.4.1 RNA biosynthesis.RNA polymerase III-dependent transcription.TATA-box-binding protein (TBP)