Gene: AT3G13350

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G13350
  • Transcript Identifier AT3G13350.1
  • Gene Type Coding gene
  • Location Chr3 : 4335721-4337804 : negative

Gene Family Information

  • ID HOM05D001261
  • #Genes/#Species 496/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G13350.1
  • uniprot Q9LTT3

Descriptions

  • Description HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain-containing protein
  • Computational description HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; LOCATED IN: nucleus, intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910), ARID/BRIGHT DNA-binding domain (InterPro:IPR001606); BEST Arabidopsis thaliana protein match is: HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (TAIR:AT1G55650.1); Has 1937 Blast hits to 1906 proteins in 204 species: Archae - 0; Bacteria - 0; Metazoa - 1434; Fungi - 73; Plants - 249; Viruses - 0; Other Eukaryotes - 181 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006355
IEA
GOA Databaseregulation of transcription, DNA-templated

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003700
ISS
Gene OntologyDNA-binding transcription factor activity1
GO:0005515
IPI
Gene Ontologyprotein binding2
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003677
IEA
InterProDNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036910 High mobility group box domain superfamily
IPR009071 High mobility group box domain
IPR001606 ARID DNA-binding domain
IPR036431 ARID DNA-binding domain superfamily
Mapman id Description
12.1.3.1 Chromatin organisation.chromatin structure.DNA bending.architectural protein (HMG-B)