Gene: AT3G12560

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G12560
  • Transcript Identifier AT3G12560.2
  • Gene Type Coding gene
  • Location Chr3 : 3982272-3984848 : negative

Gene Family Information

  • ID HOM05D000758
  • #Genes/#Species 771/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G12560.2
  • symbol TRFL9
  • Alias ATTBP2,TELOMERIC DNA-BINDING PROTEIN 2
  • uniprot Q9C7B1

Descriptions

  • Description TRF-like 9
  • Computational description TRF-like 9 (TRFL9); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: telomeric DNA binding protein 1 (TAIR:AT5G13820.1); Has 334 Blast hits to 327 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 6; Plants - 306; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
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Functional Annotation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008301
IDA
Gene OntologyDNA binding, bending1
GO:0042162
IDA
Gene Ontologytelomeric DNA binding1
GO:0003677
IEA
GOA DatabaseDNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001005 SANT/Myb domain
IPR029071 Ubiquitin-like domain superfamily
IPR009057 Homeobox-like domain superfamily
IPR031105 Telomere repeat-binding protein, plant
Mapman id Description
13.2.5.3 Cell cycle organisation.DNA replication.telomere replication.telomeric dsDNA-binding protein