Gene: AT3G12280

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G12280
  • Transcript Identifier AT3G12280.1
  • Gene Type Coding gene
  • Location Chr3 : 3913671-3918433 : negative

Gene Family Information

  • ID HOM05D003977
  • #Genes/#Species 176/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G12280.1
  • symbol RBR1
  • Alias ATRBR1,RETINOBLASTOMA-RELATED PROTEIN 1,RB,RB1,RETINOBLASTOMA 1,RBR,RETINOBLASTOMA-RELATED
  • uniprot Q9LKZ3

Descriptions

  • Description retinoblastoma-related 1
  • Computational description retinoblastoma-related 1 (RBR1); FUNCTIONS IN: transcription factor binding; INVOLVED IN: in 15 processes; LOCATED IN: cytosol; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Retinoblastoma-associated protein, B-box (InterPro:IPR002719), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Retinoblastoma-associated protein, A-box (InterPro:IPR002720), Cyclin (InterPro:IPR006670); Has 676 Blast hits to 470 proteins in 118 species: Archae - 0; Bacteria - 0; Metazoa - 486; Fungi - 0; Plants - 147; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0007129
IMP
Gene Ontologyhomologous chromosome pairing at meiosis1
GO:0008356
IMP, IGI
Gene Ontologyasymmetric cell division2 3
GO:1903866
IMP
Gene Ontologypalisade mesophyll development4
GO:0010377
IGI
Gene Ontologyguard cell fate commitment5
GO:0000082
IMP
TAS
Gene OntologyG1/S transition of mitotic cell cycle6 7
GO:0001708
IMP
Gene Ontologycell fate specification8
GO:2000134
IBA
Gene Ontologynegative regulation of G1/S transition of mitotic cell cycle9
GO:0030154
IMP
IBA
Gene Ontologycell differentiation9 10
GO:0007049
IEA
GOA Databasecell cycle
GO:0051726
IMP
IEA
Gene Ontologyregulation of cell cycle11
GO:0051726
IEA
InterProregulation of cell cycle
GO:0006357
IEA
Gene Ontologyregulation of transcription by RNA polymerase II
GO:0006357
IEA
InterProregulation of transcription by RNA polymerase II
GO:2000036
IMP
Gene Ontologyregulation of stem cell population maintenance12
GO:0009960
IMP
Gene Ontologyendosperm development11
GO:0051783
IMP
Gene Ontologyregulation of nuclear division11
GO:0010090
IMP
Gene Ontologytrichome morphogenesis13
GO:0032875
IMP
Gene Ontologyregulation of DNA endoreduplication13
GO:0048366
IMP
Gene Ontologyleaf development13
GO:0001558
IMP
Gene Ontologyregulation of cell growth12
GO:0009553
IMP
Gene Ontologyembryo sac development14
GO:0009567
IEP
Gene Ontologydouble fertilization forming a zygote and endosperm15
GO:0006349
IPI
Gene Ontologyregulation of gene expression by genetic imprinting16
GO:2000653
IDA
Gene Ontologyregulation of genetic imprinting16
GO:0009555
IMP
Gene Ontologypollen development10
GO:0022619
IMP
Gene Ontologygenerative cell differentiation10
GO:0048229
IMP
Gene Ontologygametophyte development10

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000977
IBA
Gene OntologyRNA polymerase II transcription regulatory region sequence-specific DNA binding9
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003677
IDA
Gene OntologyDNA binding17
GO:0008134
TAS
Gene Ontologytranscription factor binding6
GO:0005515
IPI
Gene Ontologyprotein binding18

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IDA
ISM
Gene Ontologynucleus19
GO:0005634
IEA
InterPronucleus
GO:0005667
IBA
Gene Ontologytranscription regulator complex9
GO:0000785
IBA
Gene Ontologychromatin9
GO:0005829
IDA
GOA Databasecytosol

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036915 Cyclin-like superfamily
IPR024599 Retinoblastoma-associated protein, N-terminal
IPR002719 Retinoblastoma-associated protein, B-box
IPR002720 Retinoblastoma-associated protein, A-box
IPR028309 Retinoblastoma protein family
Mapman id Description
13.1.2.2 Cell cycle organisation.cell cycle control.regulation.key regulator (RBR)