Gene: AT3G11960

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G11960
  • Transcript Identifier AT3G11960.3
  • Gene Type Coding gene
  • Location Chr3 : 3786431-3793160 : positive

Gene Family Information

  • ID HOM05D004807
  • #Genes/#Species 153/93
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G11960.3
  • uniprot Q84R20

Descriptions

  • Description Cleavage and polyadenylation specificity factor (CPSF) A subunit protein
  • Computational description Cleavage and polyadenylation specificity factor (CPSF) A subunit protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cleavage/polyadenylation specificity factor, A subunit, C-terminal (InterPro:IPR004871); BEST Arabidopsis thaliana protein match is: damaged DNA binding protein 1A (TAIR:AT4G05420.1); Has 1073 Blast hits to 789 proteins in 185 species: Archae - 0; Bacteria - 0; Metazoa - 332; Fungi - 287; Plants - 277; Viruses - 0; Other Eukaryotes - 177 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000398
IBA
Gene OntologymRNA splicing, via spliceosome1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
Gene Ontologynucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0030620
IBA
Gene OntologyU2 snRNA binding1
GO:0005515
IEA
InterProprotein binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISM, IBA
IEA
Gene Ontologynucleus1
GO:0005634
IEA
InterPronucleus
GO:0005686
IBA
Gene OntologyU2 snRNP1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR004871 Cleavage/polyadenylation specificity factor, A subunit, C-terminal
IPR018846 Cleavage/polyadenylation specificity factor, A subunit, N-terminal
IPR015943 WD40/YVTN repeat-like-containing domain superfamily
IPR036322 WD40-repeat-containing domain superfamily
Mapman id Description
35.1 not assigned.annotated