Gene: AT3G11540

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G11540
  • Transcript Identifier AT3G11540.1
  • Gene Type Coding gene
  • Location Chr3 : 3632842-3637547 : positive

Gene Family Information

  • ID HOM05D001558
  • #Genes/#Species 410/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G11540.1
  • symbol SPY
  • full_name SPINDLY
  • uniprot Q96301

Descriptions

  • Description Tetratricopeptide repeat (TPR)-like superfamily protein
  • Computational description SPINDLY (SPY); CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734), Sel1-like (InterPro:IPR006597); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G04240.1); Has 77055 Blast hits to 28756 proteins in 2442 species: Archae - 2374; Bacteria - 35241; Metazoa - 12084; Fungi - 2779; Plants - 2385; Viruses - 3; Other Eukaryotes - 22189 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009736
IMP
Gene Ontologycytokinin-activated signaling pathway1
GO:0030154
IEA
GOA Databasecell differentiation
GO:0009908
IEA
GOA Databaseflower development
GO:0009740
IEA
GOA Databasegibberellic acid mediated signaling pathway
GO:0009740
TAS
Gene Ontologygibberellic acid mediated signaling pathway2
GO:0048511
IEA
GOA Databaserhythmic process
GO:2000377
IMP
Gene Ontologyregulation of reactive oxygen species metabolic process3
GO:0009938
IGI
Gene Ontologynegative regulation of gibberellic acid mediated signaling pathway4
GO:0006486
IEA
Gene Ontologyprotein glycosylation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IPI
Gene Ontologyprotein binding5
GO:0005515
IEA
InterProprotein binding
GO:0016740
IEA
GOA Databasetransferase activity
GO:0016757
IEA
GOA Databaseglycosyltransferase activity
GO:0016757
ISS
Gene Ontologyglycosyltransferase activity
GO:0016262
TAS
Gene Ontologyprotein N-acetylglucosaminyltransferase activity6
GO:0097363
IEA
Gene Ontologyprotein O-GlcNAc transferase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005829
IDA
GOA Databasecytosol
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IDA
ISM
TAS
Gene Ontologynucleus2
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005737
IDA
Gene Ontologycytoplasm2

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR011990 Tetratricopeptide-like helical domain superfamily
IPR001440 Tetratricopeptide repeat 1
IPR019734 Tetratricopeptide repeat
IPR029489 O-GlcNAc transferase, C-terminal
IPR006597 Sel1-like repeat
Mapman id Description
18.1.2.2.1 Protein modification.glycosylation.O-linked glycosylation.serine/threonine O-linked glycosylation.O-fucosyltransferase (SPY)