Gene: AT3G10090

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G10090
  • Transcript Identifier AT3G10090.1
  • Gene Type Coding gene
  • Location Chr3 : 3108960-3109154 : negative

Gene Family Information

  • ID HOM05D002408
  • #Genes/#Species 281/89
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G10090.1

Descriptions

  • Description Nucleic acid-binding, OB-fold-like protein
  • Computational description Nucleic acid-binding, OB-fold-like protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Ribosomal protein S28e (InterPro:IPR000289); BEST Arabidopsis thaliana protein match is: Nucleic acid-binding, OB-fold-like protein (TAIR:AT5G03850.1); Has 1066 Blast hits to 1066 proteins in 391 species: Archae - 235; Bacteria - 0; Metazoa - 333; Fungi - 148; Plants - 161; Viruses - 0; Other Eukaryotes - 189 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000028
IBA
Gene Ontologyribosomal small subunit assembly1
GO:0030490
IBA
Gene Ontologymaturation of SSU-rRNA1
GO:0006412
IEA
InterProtranslation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003729
IDA
Gene OntologymRNA binding2
GO:0003735
IBA
Gene Ontologystructural constituent of ribosome1
GO:0003735
IEA
InterProstructural constituent of ribosome

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
ISM
Gene Ontologycytoplasm
GO:0022626
HDA
Gene Ontologycytosolic ribosome3
GO:0009505
HDA
Gene Ontologyplant-type cell wall4
GO:0022627
HDA
IBA
Gene Ontologycytosolic small ribosomal subunit1 5
GO:0005794
RCA
Gene OntologyGolgi apparatus6
GO:0005829
HDA
Gene Ontologycytosol7
GO:0005840
IEA
InterProribosome
GO:0042788
ISO
PLAZA Integrative Orthologypolysomal ribosome AT5G64140

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000289 Ribosomal protein S28e
IPR012340 Nucleic acid-binding, OB-fold
Mapman id Description
17.1.3.1.30 Protein biosynthesis.ribosome biogenesis.small ribosomal subunit (SSU).SSU proteome.component RPS28