Gene: AT3G01340

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G01340
  • Transcript Identifier AT3G01340.1
  • Gene Type Coding gene
  • Location Chr3 : 127557-128465 : negative

Gene Family Information

  • ID HOM05D002410
  • #Genes/#Species 281/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G01340.1
  • uniprot Q9SRI1

Descriptions

  • Description Transducin/WD40 repeat-like superfamily protein
  • Computational description Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: intracellular protein transport, membrane budding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781), G-protein beta WD-40 repeat, region (InterPro:IPR020472); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT2G30050.1); Has 22236 Blast hits to 13979 proteins in 554 species: Archae - 24; Bacteria - 4553; Metazoa - 7942; Fungi - 4712; Plants - 2416; Viruses - 0; Other Eukaryotes - 2589 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006606
IBA
Gene Ontologyprotein import into nucleus1
GO:0090114
IBA
Gene OntologyCOPII-coated vesicle budding1
GO:0015031
IEA
GOA Databaseprotein transport
GO:0016192
IEA
GOA Databasevesicle-mediated transport

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005198
IEA
GOA Databasestructural molecule activity
GO:0005198
IBA
Gene Ontologystructural molecule activity1
GO:0005198
IEA
InterProstructural molecule activity
GO:0005515
IEA
InterProprotein binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
ISM
Gene Ontologycytoplasm
GO:0030127
IBA
Gene OntologyCOPII vesicle coat1
GO:0031080
IBA
Gene Ontologynuclear pore outer ring1
GO:0005794
IEA
GOA DatabaseGolgi apparatus
GO:0005783
IEA
GOA Databaseendoplasmic reticulum
GO:0005829
IDA
GOA Databasecytosol

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR020472 G-protein beta WD-40 repeat
IPR001680 WD40 repeat
IPR037363 Sec13/Seh1 family
IPR036322 WD40-repeat-containing domain superfamily
IPR015943 WD40/YVTN repeat-like-containing domain superfamily
Mapman id Description
22.1.1.1.1 Vesicle trafficking.ER export trafficking.Coat protein II (COPII) coatomer machinery.coat protein complex.scaffolding component Sec13