Gene: AT2G47970

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT2G47970
  • Transcript Identifier AT2G47970.1
  • Gene Type Coding gene
  • Location Chr2 : 19629525-19630973 : positive

Gene Family Information

  • ID HOM05D004491
  • #Genes/#Species 160/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT2G47970.1
  • uniprot O82264

Descriptions

  • Description Nuclear pore localization protein NPL4
  • Computational description Nuclear pore localisation protein NPL4; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NPL4 (InterPro:IPR007717); BEST Arabidopsis thaliana protein match is: NPL4-like protein 1 (TAIR:AT3G63000.1); Has 392 Blast hits to 392 proteins in 178 species: Archae - 0; Bacteria - 0; Metazoa - 132; Fungi - 106; Plants - 67; Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0043161
IEA
Gene Ontologyproteasome-mediated ubiquitin-dependent protein catabolic process
GO:0006511
IEA
GOA Databaseubiquitin-dependent protein catabolic process
GO:0006511
IBA
Gene Ontologyubiquitin-dependent protein catabolic process1
GO:0006511
IEA
InterProubiquitin-dependent protein catabolic process

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0031625
IBA
Gene Ontologyubiquitin protein ligase binding1
GO:0043130
IBA
Gene Ontologyubiquitin binding1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005829
IDA
GOA Databasecytosol
GO:0005829
HDA
Gene Ontologycytosol2
GO:0005634
IBA
Gene Ontologynucleus1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR029071 Ubiquitin-like domain superfamily
IPR024682 Nuclear pore localisation protein Npl4, ubiquitin-like domain
IPR007717 Nuclear pore localisation protein NPL4, C-terminal
IPR016563 Nuclear protein localization protein 4
Mapman id Description
19.2.4.1.3 Protein homeostasis.ubiquitin-proteasome system.membrane-associated protein degradation.CDC48-NPL4-UFD1 chaperone complex.component NPL4