Gene: AT2G42730

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT2G42730
  • Transcript Identifier AT2G42730.1
  • Gene Type Coding gene
  • Location Chr2 : 17789606-17791218 : negative

Gene Family Information

  • ID HOM05D000689
  • #Genes/#Species 831/16
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT2G42730.1
  • uniprot Q0WR05

Descriptions

  • Description F-box/FBD/LRR protein
  • Computational description F-box family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type (InterPro:IPR003617), F-box domain, cyclin-like (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Transcription elongation factor S-II, central domain (InterPro:IPR003618), Transcription factor IIS, N-terminal (InterPro:IPR017923), Transcription elongation factor S-IIM (InterPro:IPR017890), F-box domain, Skp2-like (InterPro:IPR022364), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (TAIR:AT2G42720.1); Has 2687 Blast hits to 2614 proteins in 178 species: Archae - 0; Bacteria - 0; Metazoa - 415; Fungi - 138; Plants - 2100; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008150
ND
Gene Ontologybiological_process
GO:0000209
ISO
PLAZA Tree-based Orthologyprotein polyubiquitination AT3G42770
GO:0006952
ISO
PLAZA Tree-based Orthologydefense response AT3G03040
GO:0016036
ISO
PLAZA Tree-based Orthologycellular response to phosphate starvation AT3G42770
GO:0009901
ISO
PLAZA Tree-based Orthologyanther dehiscence AT3G62440

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003674
ND
Gene Ontologymolecular_function
GO:0005515
IEA
InterProprotein binding
GO:0061630
ISO
PLAZA Tree-based Orthologyubiquitin protein ligase activity AT3G42770

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005575
ND
Gene Ontologycellular_component
GO:0005634
ISO
PLAZA Tree-based Orthologynucleus AT4G27050
GO:0005737
ISO
PLAZA Tree-based Orthologycytoplasm AT4G27050
GO:0005783
ISO
PLAZA Tree-based Orthologyendoplasmic reticulum AT1G47920
GO:0005773
ISO
PLAZA Tree-based Orthologyvacuole AT5G25860
GO:0031225
ISO
PLAZA Tree-based Orthologyanchored component of membrane AT3G58890

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036047 F-box-like domain superfamily
IPR001810 F-box domain
IPR013101 Leucine-rich repeat 2
IPR006566 FBD domain
Mapman id Description
35.1 not assigned.annotated