Gene: AT2G41540

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT2G41540
  • Transcript Identifier AT2G41540.2
  • Gene Type Coding gene
  • Location Chr2 : 17326801-17328654 : positive

Gene Family Information

  • ID HOM05D002616
  • #Genes/#Species 261/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT2G41540.2
  • symbol GPDHC1
  • uniprot O22216

Descriptions

  • Description 6-phosphogluconate dehydrogenase family protein
  • Computational description GPDHC1; CONTAINS InterPro DOMAIN/s: 6-phosphogluconate dehydrogenase, C-terminal-like (InterPro:IPR008927), Dehydrogenase, multihelical (InterPro:IPR013328), NAD(P)-binding domain (InterPro:IPR016040), NAD-dependent glycerol-3-phosphate dehydrogenase, C-terminal (InterPro:IPR006109), NAD-dependent glycerol-3-phosphate dehydrogenase, N-terminal (InterPro:IPR011128), NAD-dependent glycerol-3-phosphate dehydrogenase (InterPro:IPR006168); BEST Arabidopsis thaliana protein match is: 6-phosphogluconate dehydrogenase family protein (TAIR:AT3G07690.1); Has 4956 Blast hits to 4956 proteins in 1719 species: Archae - 20; Bacteria - 3172; Metazoa - 444; Fungi - 126; Plants - 154; Viruses - 0; Other Eukaryotes - 1040 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005975
IEA
Gene Ontologycarbohydrate metabolic process
GO:0005975
IEA
InterProcarbohydrate metabolic process
GO:0006072
IEA
GOA Databaseglycerol-3-phosphate metabolic process
GO:0006072
IBA
Gene Ontologyglycerol-3-phosphate metabolic process1
GO:0006072
IEA
InterProglycerol-3-phosphate metabolic process
GO:0046168
IEA
Gene Ontologyglycerol-3-phosphate catabolic process
GO:0046168
IEA
InterProglycerol-3-phosphate catabolic process
GO:0006116
IBA
Gene OntologyNADH oxidation1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016491
IEA
GOA Databaseoxidoreductase activity
GO:0016491
IEA
InterProoxidoreductase activity
GO:0004367
IEA
GOA Databaseglycerol-3-phosphate dehydrogenase [NAD+] activity
GO:0004367
IGI
IBA
Gene Ontologyglycerol-3-phosphate dehydrogenase [NAD+] activity1 2
GO:0004367
IEA
InterProglycerol-3-phosphate dehydrogenase [NAD+] activity
GO:0051287
IEA
GOA DatabaseNAD binding
GO:0051287
TAS
Gene OntologyNAD binding2
GO:0051287
IEA
InterProNAD binding
GO:0016616
IEA
GOA Databaseoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0016616
IEA
InterProoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009331
IEA
Gene Ontologyglycerol-3-phosphate dehydrogenase complex
GO:0009331
IEA
InterProglycerol-3-phosphate dehydrogenase complex
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005737
ISM
Gene Ontologycytoplasm
GO:0005829
IEA
GOA Databasecytosol
GO:0005829
IDA
IBA
Gene Ontologycytosol1 2

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal
IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent
IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal
IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily
IPR013328 6-phosphogluconate dehydrogenase, domain 2
IPR036291 NAD(P)-binding domain superfamily
Mapman id Description
5.2.1.2.1 Lipid metabolism.glycerolipid biosynthesis.phosphatidate.endoplasmic reticulum phosphatidate biosynthesis.NAD-dependent glycerol-3-phosphate dehydrogenase
5.7.4.3 Lipid metabolism.lipid degradation.glycerol metabolism.NAD-dependent glycerol-3-phosphate dehydrogenase