Gene: AT2G39900
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT2G39900
- Transcript Identifier AT2G39900.1
- Gene Type Coding gene
- Location Chr2 : 16659136-16660267 : positive
Gene Family Information
- ID HOM05D000612
- #Genes/#Species 928/98
- Phylogenetic origin
- ID ORTHO05D000461
- #Genes/#Species 906/98
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT2G39900.1
- symbol WLIM2a
- uniprot O04193
Descriptions
- Description GATA type zinc finger transcription factor family protein
- Computational description GATA type zinc finger transcription factor family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, LIM-type (InterPro:IPR001781), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: GATA type zinc finger transcription factor family protein (TAIR:AT3G55770.5); Has 4468 Blast hits to 3092 proteins in 184 species: Archae - 0; Bacteria - 0; Metazoa - 3526; Fungi - 76; Plants - 531; Viruses - 0; Other Eukaryotes - 335 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0051017 | IDA IBA | Gene Ontology | actin filament bundle assembly | 1 2 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0051015 | IDA IBA | Gene Ontology | actin filament binding | 1 2 |
| GO:0046872 | IEA | GOA Database | metal ion binding | |
| GO:0003779 | IEA | GOA Database | actin binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0015629 | IDA | Gene Ontology | actin cytoskeleton | 1 |
| GO:0005886 | IBA | Gene Ontology | plasma membrane | 2 |
| GO:0005856 | IEA | GOA Database | cytoskeleton | |
| GO:0005737 | IEA | GOA Database | cytoplasm |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR001781 | Zinc finger, LIM-type |
| Mapman id | Description |
|---|---|
| 15.5.39 | RNA biosynthesis.transcriptional regulation.transcription factor (LIM) |