Gene: AT2G39460

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT2G39460
  • Transcript Identifier AT2G39460.2
  • Gene Type Coding gene
  • Location Chr2 : 16475049-16475904 : positive

Gene Family Information

  • ID HOM05D000723
  • #Genes/#Species 800/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT2G39460.2
  • symbol RPL23AA
  • Alias ATRPL23A,ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN L23A,RPL23A1,RIBOSOMAL PROTEIN L23A1,RPL23A,RIBOSOMAL PROTEIN L23A
  • uniprot Q8LD46

Descriptions

  • Description ribosomal protein L23AA
  • Computational description ribosomal protein L23AA (RPL23AA); FUNCTIONS IN: structural constituent of ribosome, RNA binding, nucleotide binding; INVOLVED IN: response to oxidative stress, response to high light intensity, response to cold, translation, ribosome biogenesis; LOCATED IN: in 6 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L23/L25, conserved site (InterPro:IPR001014), Ribosomal protein L23/L15e, core (InterPro:IPR012678), Ribosomal protein L23/L25, N-terminal (InterPro:IPR005633), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Ribosomal protein L25/L23 (InterPro:IPR013025), Ribosomal protein L23 (InterPro:IPR019985); BEST Arabidopsis thaliana protein match is: ribosomal protein L23AB (TAIR:AT3G55280.2); Has 2634 Blast hits to 2634 proteins in 929 species: Archae - 307; Bacteria - 1168; Metazoa - 411; Fungi - 142; Plants - 120; Viruses - 0; Other Eukaryotes - 486 (source: NCBI BLink).
  • Computational description ribosomal protein L23AA (RPL23AA); FUNCTIONS IN: structural constituent of ribosome, RNA binding, nucleotide binding; INVOLVED IN: response to oxidative stress, response to high light intensity, response to cold, translation, ribosome biogenesis; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, intracellular, large ribosomal subunit; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L23/L25, conserved site (InterPro:IPR001014), Ribosomal protein L23/L15e, core (InterPro:IPR012678), Ribosomal protein L23/L25, N-terminal (InterPro:IPR005633), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Ribosomal protein L25/L23 (InterPro:IPR013025), Ribosomal protein L23 (InterPro:IPR019985); BEST Arabidopsis thaliana protein match is: ribosomal protein L23AB (TAIR:AT3G55280.2); Has 2634 Blast hits to 2634 proteins in 929 species: Archae - 307; Bacteria - 1168; Metazoa - 411; Fungi - 142; Plants - 120; Viruses - 0; Other Eukaryotes - 486 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000027
IBA
Gene Ontologyribosomal large subunit assembly1
GO:0006412
TAS, IEA
Gene Ontologytranslation
GO:0006412
IEA
InterProtranslation
GO:0009644
IEP
Gene Ontologyresponse to high light intensity2
GO:0009409
IEP
Gene Ontologyresponse to cold2
GO:0006979
IEP
Gene Ontologyresponse to oxidative stress2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003735
IDA
IEA
GOA Databasestructural constituent of ribosome
GO:0003735
IBA
Gene Ontologystructural constituent of ribosome1
GO:0003735
IEA
InterProstructural constituent of ribosome
GO:0019843
IEA
GOA DatabaserRNA binding
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003729
IDA
Gene OntologymRNA binding3

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005840
IEA
GOA Databaseribosome
GO:0005840
IEA
InterProribosome
GO:0009506
IDA
GOA Databaseplasmodesma
GO:0009506
HDA
Gene Ontologyplasmodesma4
GO:0005829
IDA
GOA Databasecytosol
GO:0022626
IDA
GOA Databasecytosolic ribosome
GO:0022626
HDA
Gene Ontologycytosolic ribosome5
GO:0005730
IDA
GOA Databasenucleolus
GO:0005730
HDA
Gene Ontologynucleolus6
GO:0005618
IDA
GOA Databasecell wall
GO:0022625
IDA
GOA Databasecytosolic large ribosomal subunit
GO:0022625
HDA
IBA
Gene Ontologycytosolic large ribosomal subunit1 7
GO:0005737
ISM
Gene Ontologycytoplasm
GO:0005794
HDA
RCA
Gene OntologyGolgi apparatus8 9
GO:0009505
HDA
Gene Ontologyplant-type cell wall10
GO:0015934
TAS
Gene Ontologylarge ribosomal subunit

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR005633 Ribosomal protein L23/L25, N-terminal
IPR013025 Ribosomal protein L25/L23
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR019985 Ribosomal protein L23
IPR012678 Ribosomal protein L23/L15e core domain superfamily
Mapman id Description
17.1.2.1.24 Protein biosynthesis.ribosome biogenesis.large ribosomal subunit (LSU).LSU proteome.component RPL23a