Gene: AT2G38230

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT2G38230
  • Transcript Identifier AT2G38230.1
  • Gene Type Coding gene
  • Location Chr2 : 16011475-16012404 : positive

Gene Family Information

  • ID HOM05D001973
  • #Genes/#Species 335/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT2G38230.1
  • symbol PDX1.1
  • Alias ATPDX1.1,ARABIDOPSIS THALIANA PYRIDOXINE BIOSYNTHESIS 1.1
  • uniprot O80448

Descriptions

  • Description pyridoxine biosynthesis 1.1
  • Computational description pyridoxine biosynthesis 1.1 (PDX1.1); FUNCTIONS IN: protein heterodimerization activity; INVOLVED IN: vitamin B6 biosynthetic process, response to absence of light; LOCATED IN: cytosol, chloroplast; EXPRESSED IN: 14 plant structures; CONTAINS InterPro DOMAIN/s: Vitamin B6 biosynthesis protein (InterPro:IPR001852), Ribulose-phosphate binding barrel (InterPro:IPR011060); BEST Arabidopsis thaliana protein match is: Aldolase-type TIM barrel family protein (TAIR:AT5G01410.1); Has 4179 Blast hits to 4172 proteins in 1294 species: Archae - 234; Bacteria - 2657; Metazoa - 13; Fungi - 160; Plants - 179; Viruses - 0; Other Eukaryotes - 936 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0042823
IBA
IEA
Gene Ontologypyridoxal phosphate biosynthetic process1
GO:0042823
IEA
InterPropyridoxal phosphate biosynthetic process
GO:0042819
IEA
GOA Databasevitamin B6 biosynthetic process
GO:0042819
IGI
Gene Ontologyvitamin B6 biosynthetic process2
GO:0042819
IEA
InterProvitamin B6 biosynthetic process
GO:0008615
IBA
Gene Ontologypyridoxine biosynthetic process1
GO:0006520
IBA
Gene Ontologycellular amino acid metabolic process1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016843
IBA
Gene Ontologyamine-lyase activity1
GO:0003824
IEA
GOA Databasecatalytic activity
GO:0003824
IEA
InterProcatalytic activity
GO:0016829
IEA
GOA Databaselyase activity
GO:0046982
IPI
Gene Ontologyprotein heterodimerization activity3
GO:0036381
IEA
Gene Ontologypyridoxal 5'-phosphate synthase (glutamine hydrolysing) activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005774
ISO
PLAZA Integrative Orthologyvacuolar membrane AT2G38210
GO:0009507
IDA
GOA Databasechloroplast
GO:0009507
HDA
Gene Ontologychloroplast4
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005737
ISM
Gene Ontologycytoplasm
GO:0005783
HDA
Gene Ontologyendoplasmic reticulum5
GO:0005829
IDA, HDA
Gene Ontologycytosol2 6

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001852 Pyridoxal 5'-phosphate synthase subunit PdxS/SNZ
IPR033755 PdxS/SNZ N-terminal domain
IPR011060 Ribulose-phosphate binding barrel
IPR013785 Aldolase-type TIM barrel
Mapman id Description
7.7.1.1 Coenzyme metabolism.pyridoxalphosphate biosynthesis.pyridoxal 5'-phosphate synthase complex.synthase component