Gene: AT2G36480

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT2G36480
  • Transcript Identifier AT2G36480.1
  • Gene Type Coding gene
  • Location Chr2 : 15303114-15307535 : negative

Gene Family Information

  • ID HOM05D001701
  • #Genes/#Species 381/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT2G36480.1
  • uniprot F4IMY0

Descriptions

  • Description pre-mRNA cleavage complex 2 Pcf11-like protein
  • Computational description ENTH/VHS family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF618 (InterPro:IPR006903), RNA polymerase II, large subunit, CTD (InterPro:IPR006569), Zinc finger, C2H2-type (InterPro:IPR007087), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: PCF11P-similar protein 4 (TAIR:AT4G04885.1); Has 1796 Blast hits to 853 proteins in 236 species: Archae - 0; Bacteria - 131; Metazoa - 390; Fungi - 345; Plants - 130; Viruses - 0; Other Eukaryotes - 800 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006379
IEA
Gene OntologymRNA cleavage
GO:0006379
IEA
InterPromRNA cleavage
GO:0006378
IEA
GOA DatabasemRNA polyadenylation
GO:0006378
IBA
Gene OntologymRNA polyadenylation1
GO:0006378
IEA
InterPromRNA polyadenylation
GO:0006369
IEA
GOA Databasetermination of RNA polymerase II transcription
GO:0006369
IBA
Gene Ontologytermination of RNA polymerase II transcription1
GO:0006369
IEA
InterProtermination of RNA polymerase II transcription
GO:0006397
IEA
GOA DatabasemRNA processing

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003729
IEA
GOA DatabasemRNA binding
GO:0003729
IBA
Gene OntologymRNA binding1
GO:0003729
IEA
InterPromRNA binding
GO:0000993
IEA
GOA DatabaseRNA polymerase II complex binding
GO:0000993
IBA
Gene OntologyRNA polymerase II complex binding1
GO:0000993
IEA
InterProRNA polymerase II complex binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISM
Gene Ontologynucleus
GO:0005849
IBA
Gene OntologymRNA cleavage factor complex1
GO:0005737
IBA
Gene Ontologycytoplasm1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR008942 ENTH/VHS
IPR045154 Protein PCF11-like
IPR006569 CID domain
Mapman id Description
16.3.1.5.2 RNA processing.RNA 3'-end processing.mRNA polyadenylation.Cleavage Factor II (CF-IIm) complex.component Pcf11