Gene: AT2G17970

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT2G17970
  • Transcript Identifier AT2G17970.3
  • Gene Type Coding gene
  • Location Chr2 : 7819116-7820787 : negative

Gene Family Information

  • ID HOM05D002822
  • #Genes/#Species 246/94
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT2G17970.3
  • uniprot Q9SL49

Descriptions

  • Description 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
  • Computational description 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT4G36090.3); Has 213 Blast hits to 213 proteins in 60 species: Archae - 0; Bacteria - 4; Metazoa - 58; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).
  • Computational description 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT4G36090.2).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0070988
IDA
Gene Ontologydemethylation1
GO:0006402
IMP
IEA
Gene OntologymRNA catabolic process1
GO:0006402
IEA
InterPromRNA catabolic process

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0032451
IDA
IEA
Gene Ontologydemethylase activity1
GO:0032451
IEA
InterProdemethylase activity
GO:0003729
IDA
IEA
Gene OntologymRNA binding1
GO:0003729
IEA
InterPromRNA binding
GO:0016491
IEA
GOA Databaseoxidoreductase activity
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0051213
IEA
GOA Databasedioxygenase activity
GO:0005515
IPI
Gene Ontologyprotein binding1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
IEA
GOA Databasecytoplasm
GO:0009506
IDA
GOA Databaseplasmodesma
GO:0009506
HDA
Gene Ontologyplasmodesma2
GO:0000932
IEA
GOA DatabaseP-body
GO:0000932
IDA
Gene OntologyP-body1
GO:0005634
ISM
Gene Ontologynucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR044842 RNA demethylase ALKBH9B/ALKBH10B-like
IPR027450 Alpha-ketoglutarate-dependent dioxygenase AlkB-like
IPR037151 Alpha-ketoglutarate-dependent dioxygenase AlkB-like superfamily
Mapman id Description
16.5.8.3.1 RNA processing.RNA modification.mRNA methylation.N6-methyladenosine demethylation.demethylase (ALKBH9)