Gene: AT2G01940
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT2G01940
- Transcript Identifier AT2G01940.1
- Gene Type Coding gene
- Location Chr2 : 432652-434917 : positive
Gene Family Information
- ID HOM05D000179
- #Genes/#Species 2119/97
- Phylogenetic origin
- ID ORTHO05D000107
- #Genes/#Species 2044/97
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- tid AT2G01940.1
- symbol SGR5
- Alias ATIDD15,ARABIDOPSIS THALIANA INDETERMINATE(ID)-DOMAIN 15,IDD15,INDETERMINATE(ID)-DOMAIN 15
- full_name SHOOT GRAVITROPISM 5
- uniprot F4IPE3
Descriptions
- Description C2H2-like zinc finger protein
- Computational description SHOOT GRAVITROPISM 5 (SGR5); CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: indeterminate(ID)-domain 14 (TAIR:AT1G68130.1); Has 34856 Blast hits to 17366 proteins in 321 species: Archae - 1; Bacteria - 0; Metazoa - 32828; Fungi - 237; Plants - 754; Viruses - 1; Other Eukaryotes - 1035 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:2000012 | IGI | Gene Ontology | regulation of auxin polar transport | 1 |
| GO:0009630 | IEA | GOA Database | gravitropism | |
| GO:0009630 | IGI IBA | Gene Ontology | gravitropism | 1 2 |
| GO:0009630 | IEA | InterPro | gravitropism | |
| GO:0009959 | IMP | Gene Ontology | negative gravitropism | 3 |
| GO:0009958 | IMP | Gene Ontology | positive gravitropism | 3 |
| GO:0048444 | IGI | Gene Ontology | floral organ morphogenesis | 1 |
| GO:0010601 | IGI | Gene Ontology | positive regulation of auxin biosynthetic process | 1 |
| GO:0009965 | IGI | Gene Ontology | leaf morphogenesis | 1 |
| GO:2000904 | IMP | Gene Ontology | regulation of starch metabolic process | 4 |
| GO:0010031 | IMP | Gene Ontology | circumnutation | 4 |
| GO:0009590 | IMP | Gene Ontology | detection of gravity | 4 |
| GO:0006355 | TAS | Gene Ontology | regulation of transcription, DNA-templated | 5 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003677 | IEA | GOA Database | DNA binding | |
| GO:0046872 | IEA | GOA Database | metal ion binding | |
| GO:0005515 | IPI | Gene Ontology | protein binding | 6 |
| GO:0003700 | ISS | Gene Ontology | DNA-binding transcription factor activity | 5 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | IDA ISM, IBA | Gene Ontology | nucleus | 2 7 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 15.5.15 | RNA biosynthesis.transcriptional regulation.transcription factor (C2H2-ZF) |