Gene: AT1G80060

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G80060
  • Transcript Identifier AT1G80060.3
  • Gene Type Coding gene
  • Location Chr1 : 30116302-30117524 : negative

Gene Family Information

  • ID HOM05D001732
  • #Genes/#Species 374/95
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G80060.3
  • uniprot Q5XEN2

Descriptions

  • Description Ubiquitin-like superfamily protein
  • Computational description Ubiquitin-like superfamily protein; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: Ubiquitin-like superfamily protein (TAIR:AT4G32270.1); Has 129 Blast hits to 129 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 62; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000398
IEA
Gene OntologymRNA splicing, via spliceosome
GO:0000398
IEA
InterPromRNA splicing, via spliceosome

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003674
ND
Gene Ontologymolecular_function

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISM
Gene Ontologynucleus
GO:0005689
IEA
Gene OntologyU12-type spliceosomal complex
GO:0005689
IEA
InterProU12-type spliceosomal complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR040610 SNRNP25, ubiquitin-like domain
IPR029071 Ubiquitin-like domain superfamily
IPR039690 U11/U12 small nuclear ribonucleoprotein 25kDa protein
Mapman id Description
35.1 not assigned.annotated