Gene: AT1G78080

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G78080
  • Transcript Identifier AT1G78080.1
  • Gene Type Coding gene
  • Location Chr1 : 29364790-29365794 : positive

Gene Family Information

  • ID HOM05D000609
  • #Genes/#Species 929/94
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G78080.1
  • symbol RAP2.4
  • Alias AtWIND1,WIND1,wound induced dedifferentiation 1
  • uniprot Q8H1E4

Descriptions

  • Description related to AP2 4
  • Computational description related to AP2 4 (RAP2.4); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT1G22190.1); Has 5853 Blast hits to 5721 proteins in 258 species: Archae - 0; Bacteria - 10; Metazoa - 0; Fungi - 0; Plants - 5806; Viruses - 11; Other Eukaryotes - 26 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009409
IEP
Gene Ontologyresponse to cold1
GO:0009408
IEP
Gene Ontologyresponse to heat2
GO:0045595
IMP
Gene Ontologyregulation of cell differentiation3
GO:0009873
IEA
GOA Databaseethylene-activated signaling pathway
GO:0009873
IMP
Gene Ontologyethylene-activated signaling pathway4
GO:0006355
IEA
Gene Ontologyregulation of transcription, DNA-templated
GO:0006355
IEA
InterProregulation of transcription, DNA-templated
GO:0009414
IMP, IEP
Gene Ontologyresponse to water deprivation4
GO:0006970
IEP
Gene Ontologyresponse to osmotic stress5
GO:0071472
IEP
Gene Ontologycellular response to salt stress5
GO:0009416
IEP
Gene Ontologyresponse to light stimulus4
GO:0009651
IEP
Gene Ontologyresponse to salt stress4
GO:0010017
IGI
Gene Ontologyred or far-red light signaling pathway4
GO:0009611
IEP
Gene Ontologyresponse to wounding3
GO:0009736
IMP
Gene Ontologycytokinin-activated signaling pathway3

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0043565
IDA
IBA
Gene Ontologysequence-specific DNA binding1 6
GO:0000976
IPI
Gene Ontologytranscription cis-regulatory region binding7
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003677
IDA
TAS
Gene OntologyDNA binding4 8
GO:0003677
IEA
InterProDNA binding
GO:0003700
IEA
GOA DatabaseDNA-binding transcription factor activity
GO:0003700
IDA
ISS
TAS
Gene OntologyDNA-binding transcription factor activity4 8 9
GO:0003700
IEA
InterProDNA-binding transcription factor activity
GO:0005515
IPI
Gene Ontologyprotein binding5

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IDA
ISM, IBA
IC
Gene Ontologynucleus5 6 8

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036955 AP2/ERF domain superfamily
IPR001471 AP2/ERF domain
IPR016177 DNA-binding domain superfamily
Mapman id Description
15.5.7.2 RNA biosynthesis.transcriptional regulation.AP2/ERF transcription factor superfamily.transcription factor (DREB)