Gene: AT1G64440
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT1G64440
- Transcript Identifier AT1G64440.1
- Gene Type Coding gene
- Location Chr1 : 23937102-23939565 : positive
Gene Family Information
- ID HOM05D000776
- #Genes/#Species 759/100
- Phylogenetic origin
- ID ORTHO05D001624
- #Genes/#Species 379/100
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT1G64440.1
- symbol RHD1
- Alias REB1,ROOT EPIDERMAL BULGER1,UGE4,UDP-GLUCOSE 4-EPIMERASE
- full_name ROOT HAIR DEFECTIVE 1
- uniprot Q9C7W7
Descriptions
- Description NAD(P)-binding Rossmann-fold superfamily protein
- Computational description ROOT HAIR DEFECTIVE 1 (RHD1); CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040), UDP-glucose 4-epimerase (InterPro:IPR005886); BEST Arabidopsis thaliana protein match is: UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (TAIR:AT4G10960.1); Has 39875 Blast hits to 39850 proteins in 2971 species: Archae - 802; Bacteria - 24274; Metazoa - 636; Fungi - 515; Plants - 1061; Viruses - 41; Other Eukaryotes - 12546 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0042546 | IMP | Gene Ontology | cell wall biogenesis | 1 |
| GO:0006012 | IEA | Gene Ontology | galactose metabolic process | |
| GO:0006012 | IEA | InterPro | galactose metabolic process | |
| GO:0071555 | IEA | GOA Database | cell wall organization | |
| GO:0005975 | IEA | GOA Database | carbohydrate metabolic process | |
| GO:0006364 | IBA | Gene Ontology | rRNA processing | 2 |
| GO:0010306 | IMP | Gene Ontology | rhamnogalacturonan II biosynthetic process | 3 |
| GO:0010246 | IMP | Gene Ontology | rhamnogalacturonan I biosynthetic process | 3 |
| GO:0009969 | IMP | Gene Ontology | xyloglucan biosynthetic process | 3 |
| GO:0009832 | TAS | Gene Ontology | plant-type cell wall biogenesis | 4 |
| GO:0010053 | IMP | Gene Ontology | root epidermal cell differentiation | 5 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003978 | IEA | GOA Database | UDP-glucose 4-epimerase activity | |
| GO:0003978 | IDA, IGI TAS | Gene Ontology | UDP-glucose 4-epimerase activity | 4 6 |
| GO:0003978 | IEA | InterPro | UDP-glucose 4-epimerase activity | |
| GO:0016853 | IEA | GOA Database | isomerase activity | |
| GO:0003723 | IBA | Gene Ontology | RNA binding | 2 |
| GO:0046983 | IPI | Gene Ontology | protein dimerization activity | 6 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005794 | IEA | GOA Database | Golgi apparatus | |
| GO:0005794 | ISM | Gene Ontology | Golgi apparatus | |
| GO:0005737 | IEA | GOA Database | cytoplasm | |
| GO:0005795 | IEA | GOA Database | Golgi stack | |
| GO:0005795 | IDA | Gene Ontology | Golgi stack | 6 |
| GO:0005829 | IBA | Gene Ontology | cytosol | 2 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 3.13.8 | Carbohydrate metabolism.nucleotide sugar biosynthesis.UDP-D-glucose 4-epimerase |