Gene: AT1G55020
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT1G55020
- Transcript Identifier AT1G55020.1
- Gene Type Coding gene
- Location Chr1 : 20525798-20530143 : positive
Gene Family Information
- ID HOM05D000208
- #Genes/#Species 1933/98
- Phylogenetic origin
- ID ORTHO05D000130
- #Genes/#Species 1771/98
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid AT1G55020.1
- symbol LOX1
- Alias ATLOX1,ARABIDOPSIS LIPOXYGENASE 1
- uniprot Q06327
Descriptions
- Description lipoxygenase 1
- Computational description lipoxygenase 1 (LOX1); CONTAINS InterPro DOMAIN/s: Lipoxygenase, iron binding site (InterPro:IPR020833), Lipoxygenase, C-terminal (InterPro:IPR013819), Lipoxygenase, LH2 (InterPro:IPR001024), Lipase/lipooxygenase, PLAT/LH2 (InterPro:IPR008976), Lipoxygenase, conserved site (InterPro:IPR020834), Lipoxygenase (InterPro:IPR000907), Lipoxygenase, plant (InterPro:IPR001246); BEST Arabidopsis thaliana protein match is: PLAT/LH2 domain-containing lipoxygenase family protein (TAIR:AT3G22400.1); Has 1484 Blast hits to 1444 proteins in 180 species: Archae - 0; Bacteria - 84; Metazoa - 533; Fungi - 49; Plants - 793; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0002215 | ISO | PLAZA Integrative Orthology | defense response to nematode | Zm00001eb054040 |
| GO:0006952 | IEA | GOA Database | defense response | |
| GO:0006952 | TAS | Gene Ontology | defense response | 1 |
| GO:0042758 | ISO | PLAZA Integrative Orthology | long-chain fatty acid catabolic process | Zm00001eb067710 |
| GO:0051707 | ISO | PLAZA Integrative Orthology | response to other organism | Os03g0738600 |
| GO:0009620 | ISO | PLAZA Integrative Orthology | response to fungus | Zm00001eb054040 |
| GO:0009751 | ISO | PLAZA Integrative Orthology | response to salicylic acid | Zm00001eb067710 |
| GO:0050832 | ISO | PLAZA Integrative Orthology | defense response to fungus | Zm00001eb054040 |
| GO:0009625 | ISO | PLAZA Integrative Orthology | response to insect | Zm00001eb144960 |
| GO:0009845 | ISO | PLAZA Integrative Orthology | seed germination | Zm00001eb054040 |
| GO:0009723 | ISO | PLAZA Integrative Orthology | response to ethylene | Zm00001eb067710 |
| GO:0009753 | IEP | Gene Ontology | response to jasmonic acid | 1 |
| GO:0031408 | IEA | Gene Ontology | oxylipin biosynthetic process | |
| GO:0010311 | IMP | Gene Ontology | lateral root formation | 2 |
| GO:0048364 | IMP | Gene Ontology | root development | 2 |
| GO:0034440 | IDA IBA | Gene Ontology | lipid oxidation | 3 4 |
| GO:0009611 | TAS | Gene Ontology | response to wounding | 1 |
| GO:0009695 | TAS | Gene Ontology | jasmonic acid biosynthetic process | 1 |
| GO:0009737 | IEP | Gene Ontology | response to abscisic acid | 1 |
| GO:0030397 | TAS | Gene Ontology | membrane disassembly | 1 |
| GO:0042742 | IEP | Gene Ontology | defense response to bacterium | 1 |
| GO:0006629 | IEA | GOA Database | lipid metabolic process | |
| GO:0006631 | IEA | GOA Database | fatty acid metabolic process | |
| GO:0006633 | IEA | GOA Database | fatty acid biosynthetic process |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0051213 | IEA | GOA Database | dioxygenase activity | |
| GO:0046872 | IEA | GOA Database | metal ion binding | |
| GO:0046872 | IEA | InterPro | metal ion binding | |
| GO:0016491 | IEA | GOA Database | oxidoreductase activity | |
| GO:0016491 | IEA | InterPro | oxidoreductase activity | |
| GO:0016702 | IEA | GOA Database | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen | |
| GO:0016702 | IBA | Gene Ontology | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen | 4 |
| GO:0016702 | IEA | InterPro | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen | |
| GO:0005515 | IEA | InterPro | protein binding | |
| GO:0016832 | ISO | PLAZA Integrative Orthology | aldehyde-lyase activity | Zm00001eb067710 |
| GO:0016165 | ISO | PLAZA Integrative Orthology | linoleate 13S-lipoxygenase activity | Zm00001eb144960 |
| GO:1990136 | IEA | GOA Database | linoleate 9S-lipoxygenase activity | |
| GO:1990136 | IDA | Gene Ontology | linoleate 9S-lipoxygenase activity | 5 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009570 | ISO | PLAZA Integrative Orthology | chloroplast stroma | Zm00001eb067710 |
| GO:0009536 | IDA | Gene Ontology | plastid | 6 |
| GO:0005737 | IEA | GOA Database | cytoplasm | |
| GO:0005737 | ISM | Gene Ontology | cytoplasm |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR001024 | PLAT/LH2 domain |
| IPR036226 | Lipoxigenase, C-terminal domain superfamily |
| IPR013819 | Lipoxygenase, C-terminal |
| IPR036392 | PLAT/LH2 domain superfamily |
| IPR000907 | Lipoxygenase |
| IPR001246 | Lipoxygenase, plant |
| IPR042057 | Plant lipoxygenase, PLAT/LH2 domain |
| IPR027433 | Lipoxygenase, domain 3 |
| Mapman id | Description |
|---|---|
| 50.1.12 | Enzyme classification.EC_1 oxidoreductases.EC_1.13 oxidoreductase acting on single donor with incorporation of molecular oxygen (oxygenase) |