Gene: AT1G54500
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT1G54500
- Transcript Identifier AT1G54500.1
- Gene Type Coding gene
- Location Chr1 : 20357084-20357671 : negative
Gene Family Information
- ID HOM05D006377
- #Genes/#Species 125/93
- Phylogenetic origin
- ID ORTHO05D008001
- #Genes/#Species 124/93
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid AT1G54500.1
- uniprot Q9SLI4
Descriptions
- Description Rubredoxin-like superfamily protein
- Computational description Rubredoxin-like superfamily protein; FUNCTIONS IN: electron carrier activity, metal ion binding; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rubredoxin, iron-binding site (InterPro:IPR018527), Rubredoxin-type Fe(Cys)4 protein (InterPro:IPR004039); Has 3108 Blast hits to 3080 proteins in 1023 species: Archae - 186; Bacteria - 2587; Metazoa - 0; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 283 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0022900 | IEA | GOA Database | electron transport chain | |
| GO:0043448 | IBA | Gene Ontology | alkane catabolic process | 1 |
| GO:0010207 | IDA, IMP | Gene Ontology | photosystem II assembly | 2 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005506 | IEA | Gene Ontology | iron ion binding | |
| GO:0005506 | IEA | InterPro | iron ion binding | |
| GO:0046872 | IEA | GOA Database | metal ion binding | |
| GO:0009055 | IBA | Gene Ontology | electron transfer activity | 1 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009507 | IDA | GOA Database | chloroplast | |
| GO:0009507 | HDA ISM, IBA | Gene Ontology | chloroplast | 1 3 |
| GO:0016020 | IEA | GOA Database | membrane | |
| GO:0016021 | IEA | GOA Database | integral component of membrane | |
| GO:0009535 | IDA | GOA Database | chloroplast thylakoid membrane | |
| GO:0009535 | HDA | Gene Ontology | chloroplast thylakoid membrane | 4 |
| GO:0005634 | HDA | Gene Ontology | nucleus | 5 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR024935 | Rubredoxin domain |
| Mapman id | Description |
|---|---|
| 1.1.1.3.15 | Photosynthesis.photophosphorylation.photosystem II.assembly.assembly factor (RBD1) |