Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G54500 Arabidopsis thaliana HOM05D006377 ORTHO05D008001 1.0e-108 396.7 196 100.0
AL1G64910 Arabidopsis lyrata HOM05D006377 ORTHO05D008001 1.2e-104 383.3 196 95.9
CARHR055600 Cardamine hirsuta HOM05D006377 ORTHO05D008001 1.8e-94 349.4 197 88.3
Carub.0002s0934 Capsella rubella HOM05D006377 ORTHO05D008001 2.3e-89 332.4 202 87.1
SpUn0001_0720 Schrenkiella parvula HOM05D006377 ORTHO05D008001 8.9e-81 303.9 200 81.0
Thhalv10023702m.g Eutrema salsugineum HOM05D006377 ORTHO05D008001 3.7e-79 298.5 202 78.7
Aa31LG2G12300 Aethionema arabicum HOM05D006377 ORTHO05D008001 9.8e-72 273.9 196 75.0
BcaB02g08603 Brassica carinata HOM05D006377 ORTHO05D008001 9.8e-72 273.9 196 75.5
A04p07500 Brassica napus HOM05D006377 ORTHO05D008001 2.2e-71 272.7 199 74.9
BcaC02g09303 Brassica carinata HOM05D006377 ORTHO05D008001 3.7e-71 271.9 198 74.7
C04p41160 Brassica napus HOM05D006377 ORTHO05D008001 1.1e-70 270.4 198 74.2
BolC4t25698H Brassica oleracea HOM05D006377 ORTHO05D008001 1.1e-70 270.4 198 74.2
BraA04t16445Z Brassica rapa HOM05D006377 ORTHO05D008001 2.4e-70 269.2 199 74.4
THA.LOC104805815 Tarenaya hassleriana HOM05D006377 ORTHO05D008001 1.1e-59 233.8 203 64.5
Medtr7g114590 Medicago truncatula HOM05D006377 ORTHO05D008001 4.4e-56 221.9 198 63.1
Gorai.007G285800 Gossypium raimondii HOM05D006377 ORTHO05D008001 7.6e-56 221.1 205 62.4
Gohir.D11G265800 Gossypium hirsutum HOM05D006377 ORTHO05D008001 2.9e-55 219.2 205 62.0
Atru.chr2.718 Acer truncatum HOM05D006377 ORTHO05D008001 4.9e-55 218.4 125 81.6
Lj1g0014721 Lotus japonicus HOM05D006377 ORTHO05D008001 6.4e-55 218.0 141 73.0
Haze_04319 Corylus avellana HOM05D006377 ORTHO05D008001 1.4e-54 216.9 192 62.5
TPR.G7004 Trifolium pratense HOM05D006377 ORTHO05D008001 1.9e-54 216.5 196 60.7
Cfa006472 Carpinus fangiana HOM05D006377 ORTHO05D008001 2.4e-54 216.1 192 62.5
Gohir.A11G256100 Gossypium hirsutum HOM05D006377 ORTHO05D008001 3.2e-54 215.7 205 61.5
Potri.013G035700 Populus trichocarpa HOM05D006377 ORTHO05D008001 3.2e-54 215.7 184 65.2
FvH4_6g03680 Fragaria vesca HOM05D006377 ORTHO05D008001 5.4e-54 214.9 199 62.3
Ca_09403_v3 Cicer arietinum L. HOM05D006377 ORTHO05D008001 9.2e-54 214.2 196 61.2
Ca_30164_v3 Cicer arietinum L. HOM05D006377 ORTHO05D008001 9.2e-54 214.2 196 61.2
VMungo0540G1412 Vigna mungo HOM05D006377 ORTHO05D008001 9.2e-54 214.2 116 84.5
FAN14G3144 Fragaria x ananassa HOM05D006377 ORTHO05D008001 1.2e-53 213.8 162 68.5
RcHm_v2.0_Chr3g0452211 Rosa chinensis HOM05D006377 ORTHO05D008001 1.6e-53 213.4 162 66.0
Cpa.g.sc264.18 Carica papaya HOM05D006377 ORTHO05D008001 2.1e-53 213.0 117 83.8
Ciclev10002532m.g Citrus clementina HOM05D006377 ORTHO05D008001 2.7e-53 212.6 117 83.8
Sabra05G0044300 Salix brachista HOM05D006377 ORTHO05D008001 3.5e-53 212.2 136 77.9
FAN02G4534 Fragaria x ananassa HOM05D006377 ORTHO05D008001 4.6e-53 211.8 119 83.2
FAN05G4075 Fragaria x ananassa HOM05D006377 ORTHO05D008001 4.6e-53 211.8 197 59.4
Prupe.6G338600 Prunus persica HOM05D006377 ORTHO05D008001 4.6e-53 211.8 141 74.5
arahy.Tifrunner.gnm1.ann1.VW98FE Arachis hypogaea HOM05D006377 ORTHO05D008001 6.0e-53 211.5 119 81.5
Sed0019582 Sechium edule HOM05D006377 ORTHO05D008001 6.0e-53 211.5 158 68.4
Manes.08G127500 Manihot esculenta HOM05D006377 ORTHO05D008001 7.8e-53 211.1 113 86.7
Potri.005G049000 Populus trichocarpa HOM05D006377 ORTHO05D008001 7.8e-53 211.1 187 63.6
TWI36G1766 Tripterygium wilfordii HOM05D006377 ORTHO05D008001 7.8e-53 211.1 196 59.7
FAN05G1987 Fragaria x ananassa HOM05D006377 ORTHO05D008001 1.0e-52 210.7 197 59.4
Glyma.03G245100 Glycine max HOM05D006377 ORTHO05D008001 1.3e-52 210.3 178 64.0
MD04G1219300 Malus domestica HOM05D006377 ORTHO05D008001 3.0e-52 209.1 124 79.0
Phvul.006G099300 Phaseolus vulgaris HOM05D006377 ORTHO05D008001 3.0e-52 209.1 171 62.0
PGR004G2824 Punica granatum HOM05D006377 ORTHO05D008001 3.0e-52 209.1 155 68.4
Lalb_Chr15g0076921 Lupinus albus HOM05D006377 ORTHO05D008001 8.7e-52 207.6 164 65.2
MD12G1236300 Malus domestica HOM05D006377 ORTHO05D008001 8.7e-52 207.6 204 58.8
Nn2g12517 Nelumbo nucifera HOM05D006377 ORTHO05D008001 1.5e-51 206.8 149 68.5
TAR365G0273 Trochodendron aralioides HOM05D006377 ORTHO05D008001 1.5e-51 206.8 197 59.9
CiPaw.08G178700 Carya illinoinensis HOM05D006377 ORTHO05D008001 1.9e-51 206.5 198 60.6
QL03p023258 Quercus lobata HOM05D006377 ORTHO05D008001 1.9e-51 206.5 198 60.6
Duzib177G1058 Durio zibethinus HOM05D006377 ORTHO05D008001 2.5e-51 206.1 208 57.2
ClCG02G016370 Citrullus lanatus HOM05D006377 ORTHO05D008001 4.3e-51 205.3 144 71.5
Actinidia05760 Actinidia chinensis HOM05D006377 ORTHO05D008001 5.6e-51 204.9 150 66.7
Thecc.05G289700 Theobroma cacao HOM05D006377 ORTHO05D008001 7.3e-51 204.5 222 55.9
Migut.E01572 Erythranthe guttata HOM05D006377 ORTHO05D008001 9.6e-51 204.1 154 66.2
QL03p023964 Quercus lobata HOM05D006377 ORTHO05D008001 9.6e-51 204.1 200 61.5
Oeu027050.1 Olea europaea HOM05D006377 ORTHO05D008001 1.2e-50 203.8 129 73.6
Ah.06g192660 Amaranthus hybridus HOM05D006377 ORTHO05D008001 3.6e-50 202.2 111 85.6
HanXRQChr04g0094091 Helianthus annuus HOM05D006377 ORTHO05D008001 6.2e-50 201.4 195 57.9
SalBow5G2979 Salvia bowleyana HOM05D006377 ORTHO05D008001 6.2e-50 201.4 122 77.9
MBI19_g37073_MAGBIO Magnolia biondii HOM05D006377 ORTHO05D008001 8.1e-50 201.1 117 77.8
MSTRG.3650 Avicennia marina HOM05D006377 ORTHO05D008001 1.1e-49 200.7 197 55.3
CAN.G134.174 Capsicum annuum HOM05D006377 ORTHO05D008001 1.1e-49 200.7 113 82.3
FAN09G4008 Fragaria x ananassa HOM05D006377 ORTHO05D008001 1.1e-49 200.7 193 59.6
CSS0017897 Camellia sinensis var. sinensis HOM05D006377 ORTHO05D008001 1.4e-49 200.3 208 58.7
CsaV3_2G004360 Cucumis sativus L. HOM05D006377 ORTHO05D008001 1.4e-49 200.3 138 71.0
ECA238G1597 Erigeron canadensis HOM05D006377 ORTHO05D008001 1.4e-49 200.3 150 65.3
CSS0039444 Camellia sinensis var. sinensis HOM05D006377 ORTHO05D008001 1.8e-49 199.9 206 58.3
vmacro05068 Vaccinium macrocarpon HOM05D006377 ORTHO05D008001 2.4e-49 199.5 210 56.2
MELO3C004358.2 Cucumis melo HOM05D006377 ORTHO05D008001 3.1e-49 199.1 144 70.1
Oeu012478.1 Olea europaea HOM05D006377 ORTHO05D008001 4.0e-49 198.7 184 58.7
PSO210G5336 Papaver somniferum HOM05D006377 ORTHO05D008001 5.3e-49 198.4 172 61.0
Sc20g0000200 Simmondsia chinensis HOM05D006377 ORTHO05D008001 6.9e-49 198.0 197 56.9
Hma1.2p1_0332F.1_g127770 Hydrangea macrophylla HOM05D006377 ORTHO05D008001 9.0e-49 197.6 115 79.1
Lsat_1_v5_gn_2_67840 Lactuca sativa HOM05D006377 ORTHO05D008001 9.0e-49 197.6 198 58.1
Aqoxy2G02484 Aquilegia oxysepala HOM05D006377 ORTHO05D008001 1.2e-48 197.2 120 76.7
PSO761G0064 Papaver somniferum HOM05D006377 ORTHO05D008001 1.2e-48 197.2 172 60.5
EL10Ac4g09192 Beta vulgaris HOM05D006377 ORTHO05D008001 1.5e-48 196.8 189 56.1
Solyc01g097910.2 Solanum lycopersicum HOM05D006377 ORTHO05D008001 1.5e-48 196.8 113 81.4
Sopen01g041500 Solanum pennellii HOM05D006377 ORTHO05D008001 1.5e-48 196.8 113 81.4
PGSC0003DMG400022504 Solanum tuberosum HOM05D006377 ORTHO05D008001 1.5e-48 196.8 113 81.4
Nitab4.5_0002840g0030 Nicotiana tabacum HOM05D006377 ORTHO05D008001 3.4e-48 195.7 206 55.8
SGA_v2.0_scaffold35G13993 Striga asiatica HOM05D006377 ORTHO05D008001 3.4e-48 195.7 134 70.9
unitig_0.g1675 Utricularia gibba HOM05D006377 ORTHO05D008001 7.6e-48 194.5 145 64.8
Os08g0323400 Oryza sativa ssp. japonica HOM05D006377 ORTHO05D008001 9.9e-48 194.1 114 76.3
Rhsim07G0175800 Rhododendron simsii HOM05D006377 ORTHO05D008001 9.9e-48 194.1 205 57.1
Nitab4.5_0002361g0100 Nicotiana tabacum HOM05D006377 ORTHO05D008001 1.7e-47 193.4 209 54.5
CDE12G0044 Ceratophyllum demersum HOM05D000526 ORTHO05D000956 8.4e-47 191.0 147 62.6
Cc02_g31420 Coffea canephora HOM05D006377 ORTHO05D008001 8.4e-47 191.0 198 52.5
Sabra13G0035000 Salix brachista HOM05D006377 ORTHO05D008001 1.4e-46 190.3 145 67.6
Peaxi162Scf00404g00014 Petunia axillaris HOM05D006377 ORTHO05D008001 7.1e-46 188.0 191 56.5
Zm00001eb140200 Zea mays HOM05D006377 ORTHO05D008001 7.1e-46 188.0 172 57.6
Lj7P475T32 Lonicera japonica HOM05D006377 ORTHO05D008001 9.3e-46 187.6 113 78.8
Psat5g039080 Pisum sativum HOM05D006377 ORTHO05D008001 9.3e-46 187.6 179 58.7
CDE01G0680 Ceratophyllum demersum HOM05D000526 ORTHO05D000956 1.2e-45 187.2 166 57.2
Zm00001eb061720 Zea mays HOM05D006377 ORTHO05D008001 1.6e-45 186.8 114 73.7
Zm00001eb061690 Zea mays HOM05D006377 ORTHO05D008001 2.1e-45 186.4 114 73.7
ATR0796G227 Amborella trichopoda HOM05D006377 ORTHO05D008001 1.3e-44 183.7 175 56.6
HPP92_001948 Vanilla planifolia HOM05D006377 ORTHO05D008001 6.6e-44 181.4 137 62.8
AagrBONN_evm.TU.Sc2ySwM_368.50 Anthoceros agrestis HOM05D006377 ORTHO05D008001 1.5e-43 180.3 124 68.5
Zm00001eb061670 Zea mays HOM05D006377 ORTHO05D008001 4.3e-43 178.7 151 60.3
Zm00001eb061700 Zea mays HOM05D006377 ORTHO05D008001 4.3e-43 178.7 171 54.4
AagrBONN_evm.TU.Sc2ySwM_344.5347 Anthoceros agrestis HOM05D006377 ORTHO05D008001 9.6e-43 177.6 128 64.1
Duzib128G0229 Durio zibethinus HOM05D006377 ORTHO05D008001 3.6e-42 175.6 133 62.4
SEGI_38373 Sequoiadendron giganteum HOM05D006377 ORTHO05D008001 3.6e-42 175.6 201 50.2
AUR62000968 Chenopodium quinoa HOM05D006377 ORTHO05D008001 1.8e-41 173.3 96 80.2
Dinv11572 Davidia involucrata HOM05D006377 ORTHO05D008001 4.0e-41 172.2 98 79.6
Manes.09G157000 Manihot esculenta HOM05D006377 ORTHO05D008001 5.3e-41 171.8 89 85.4
Pp3c1_22450 Physcomitrium patens HOM05D006377 ORTHO05D008001 2.6e-40 169.5 132 62.1
Actinidia30919 Actinidia chinensis HOM05D006377 ORTHO05D008001 3.4e-40 169.1 178 55.6
Mapoly0032s0089 Marchantia polymorpha HOM05D006377 ORTHO05D008001 1.7e-39 166.8 144 58.3
CBR_g55374 Chara braunii HOM05D006377 ORTHO05D008001 3.8e-39 165.6 113 68.1
AagrBONN_evm.TU.Sc2ySwM_368.3396 Anthoceros agrestis HOM05D006377 ORTHO05D008001 8.4e-39 164.5 136 58.1
Zm00001eb061710 Zea mays HOM05D006377 ORTHO05D008001 8.4e-39 164.5 169 51.5
Pp3c2_13970 Physcomitrium patens HOM05D006377 ORTHO05D008001 1.4e-38 163.7 137 60.6
SMO137G0026 Selaginella moellendorffii HOM05D006377 ORTHO05D008001 7.1e-38 161.4 108 68.5
DCAR_009137 Daucus carota HOM05D006377 ORTHO05D008001 6.7e-36 154.8 83 84.3
unitig_748.g7013 Utricularia gibba HOM05D000757 ORTHO05D000622 8.7e-36 154.5 146 52.7
AUR62004997 Chenopodium quinoa HOM05D006377 ORTHO05D008001 1.9e-35 153.3 78 84.6
Cre07.g315150 Chlamydomonas reinhardtii HOM05D006377 ORTHO05D008001 7.6e-32 141.4 124 53.2
MCO15G508 Micromonas commoda HOM05D006377 ORTHO05D008001 2.3e-28 129.8 113 53.1
Hma1.2p1_0332F.1_g127760 Hydrangea macrophylla HOM05D006377 ORTHO05D008001 1.4e-25 120.6 65 76.9
Zm00001eb061680 Zea mays HOM05D006377 ORTHO05D008001 6.9e-25 118.2 135 44.4
PRCOL_00004455 Prasinoderma coloniale HOM05D006377 ORTHO05D008001 1.7e-23 113.6 117 48.7
Hma1.2p1_0332F.1_g127740 Hydrangea macrophylla HOM05D006377 ORTHO05D008001 3.2e-14 82.8 84 50.0


User provided reference genes

Program Settings