Gene: AT1G52330

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G52330
  • Transcript Identifier AT1G52330.2
  • Gene Type Coding gene
  • Location Chr1 : 19488962-19489645 : positive

Gene Family Information

  • ID HOM05D003111
  • #Genes/#Species 220/92
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G52330.2
  • uniprot Q5BPW9

Descriptions

  • Description Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
  • Computational description Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (TAIR:AT4G13270.1); Has 133 Blast hits to 132 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 133; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
  • Computational description Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (TAIR:AT4G13270.1); Has 108 Blast hits to 108 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 108; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009269
IEA
Gene Ontologyresponse to desiccation
GO:0009269
IEA
InterProresponse to desiccation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003674
ND
Gene Ontologymolecular_function

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISM
Gene Ontologynucleus
GO:0016021
IEA
GOA Databaseintegral component of membrane
GO:0016020
IEA
GOA Databasemembrane

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR004864 Late embryogenesis abundant protein, LEA_2 subgroup
IPR013990 Water stress and hypersensitive response domain
Mapman id Description
35.1 not assigned.annotated