Gene: AT1G51940

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G51940
  • Transcript Identifier AT1G51940.1
  • Gene Type Coding gene
  • Location Chr1 : 19296092-19298941 : negative

Gene Family Information

  • ID HOM05D000225
  • #Genes/#Species 1826/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G51940.1
  • symbol LYK3
  • Alias AtLYK3
  • full_name LysM-containing receptor-like kinase 3
  • uniprot F4IB81

Descriptions

  • Description protein kinase family protein / peptidoglycan-binding LysM domain-containing protein
  • Computational description protein kinase family protein / peptidoglycan-binding LysM domain-containing protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation, cell wall macromolecule catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Peptidoglycan-binding Lysin subgroup (InterPro:IPR002482), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: chitin elicitor receptor kinase 1 (TAIR:AT3G21630.1); Has 117626 Blast hits to 116415 proteins in 4493 species: Archae - 110; Bacteria - 13527; Metazoa - 43649; Fungi - 10139; Plants - 32288; Viruses - 471; Other Eukaryotes - 17442 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0045087
IEA
GOA Databaseinnate immune response
GO:0045087
IMP
Gene Ontologyinnate immune response1
GO:0045087
IEA
InterProinnate immune response
GO:0006468
IEA
Gene Ontologyprotein phosphorylation
GO:0006468
IEA
InterProprotein phosphorylation
GO:0016310
IEA
GOA Databasephosphorylation
GO:0050832
IMP
Gene Ontologydefense response to fungus1
GO:0031348
IMP
Gene Ontologynegative regulation of defense response1
GO:0009789
IMP
Gene Ontologypositive regulation of abscisic acid-activated signaling pathway1
GO:0009738
IMP
Gene Ontologyabscisic acid-activated signaling pathway1
GO:0009737
IMP
Gene Ontologyresponse to abscisic acid1
GO:0006952
IMP
Gene Ontologydefense response1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016740
IEA
GOA Databasetransferase activity
GO:0019199
IEA
Gene Ontologytransmembrane receptor protein kinase activity
GO:0019199
IEA
InterProtransmembrane receptor protein kinase activity
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0004672
IEA
GOA Databaseprotein kinase activity
GO:0004672
IEA
InterProprotein kinase activity
GO:0016301
IEA
GOA Databasekinase activity
GO:0016301
ISS
Gene Ontologykinase activity
GO:0004674
IEA
GOA Databaseprotein serine/threonine kinase activity
GO:0000166
IEA
GOA Databasenucleotide binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016020
IEA
GOA Databasemembrane
GO:0016021
IEA
GOA Databaseintegral component of membrane
GO:0005886
IEA
GOA Databaseplasma membrane
GO:0005886
IDA
Gene Ontologyplasma membrane1
GO:0009507
ISM
Gene Ontologychloroplast

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR018392 LysM domain
IPR001245 Serine-threonine/tyrosine-protein kinase, catalytic domain
IPR011009 Protein kinase-like domain superfamily
IPR000719 Protein kinase domain
IPR044812 LysM domain receptor kinase CERK1/LYK3-like
IPR036779 LysM domain superfamily
Mapman id Description
18.4.1.21 Protein modification.phosphorylation.TKL protein kinase superfamily.protein kinase (LysM)