Gene: AT1G50900
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT1G50900
- Transcript Identifier AT1G50900.1
- Gene Type Coding gene
- Location Chr1 : 18866272-18867014 : positive
Gene Family Information
- ID HOM05D005249
- #Genes/#Species 144/95
- Phylogenetic origin
- ID ORTHO05D006457
- #Genes/#Species 142/95
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid AT1G50900.1
- symbol GDC1
- Alias LTD,LHCP translocation defect
- full_name Grana Deficient Chloroplast 1
- uniprot Q8VY88
Descriptions
- Description Ankyrin repeat family protein
- Computational description Ankyrin repeat family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); Has 55 Blast hits to 55 proteins in 21 species: Archae - 0; Bacteria - 2; Metazoa - 1; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0090391 | IEA | GOA Database | granum assembly | |
GO:0090391 | IMP IBA | Gene Ontology | granum assembly | 1 2 |
GO:0090391 | IEA | InterPro | granum assembly | |
GO:0006886 | IEA | GOA Database | intracellular protein transport | |
GO:0006886 | IDA IBA | Gene Ontology | intracellular protein transport | 2 3 |
GO:0006886 | IEA | InterPro | intracellular protein transport | |
GO:0015031 | IEA | GOA Database | protein transport | |
GO:0080167 | IEP | GOA Database | response to karrikin |
Molecular Function
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0005515 | IPI | Gene Ontology | protein binding | 3 |
Cellular Component
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0009570 | IEA | GOA Database | chloroplast stroma | |
GO:0009570 | IDA, HDA IBA | Gene Ontology | chloroplast stroma | 2 3 4 |
GO:0009570 | IEA | InterPro | chloroplast stroma | |
GO:0009579 | IEA | GOA Database | thylakoid | |
GO:0016020 | IEA | GOA Database | membrane | |
GO:0009507 | IEA | GOA Database | chloroplast | |
GO:0009507 | IDA, HDA ISM | Gene Ontology | chloroplast | 1 5 |
GO:0009536 | IEA | GOA Database | plastid | |
GO:0009535 | IEA | GOA Database | chloroplast thylakoid membrane | |
GO:0009941 | IEA | GOA Database | chloroplast envelope | |
GO:0009941 | IDA IBA | Gene Ontology | chloroplast envelope | 2 3 |
Color Legend
Experimental Evidence |
Computational Reviewed Evidence |
Electronic Evidence |
Mapman id | Description |
---|---|
23.1.7.1 | Protein translocation.chloroplast.thylakoid membrane SRP insertion system.TIC-to-SRP handover factor (LTD) |