Gene: AT1G50900

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G50900
  • Transcript Identifier AT1G50900.1
  • Gene Type Coding gene
  • Location Chr1 : 18866272-18867014 : positive

Gene Family Information

  • ID HOM05D005249
  • #Genes/#Species 144/95
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G50900.1
  • symbol GDC1
  • Alias LTD,LHCP translocation defect
  • full_name Grana Deficient Chloroplast 1
  • uniprot Q8VY88

Descriptions

  • Description Ankyrin repeat family protein
  • Computational description Ankyrin repeat family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); Has 55 Blast hits to 55 proteins in 21 species: Archae - 0; Bacteria - 2; Metazoa - 1; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0090391
IEA
GOA Databasegranum assembly
GO:0090391
IMP
IBA
Gene Ontologygranum assembly1 2
GO:0090391
IEA
InterProgranum assembly
GO:0006886
IEA
GOA Databaseintracellular protein transport
GO:0006886
IDA
IBA
Gene Ontologyintracellular protein transport2 3
GO:0006886
IEA
InterProintracellular protein transport
GO:0015031
IEA
GOA Databaseprotein transport
GO:0080167
IEP
GOA Databaseresponse to karrikin

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IPI
Gene Ontologyprotein binding3

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009570
IEA
GOA Databasechloroplast stroma
GO:0009570
IDA, HDA
IBA
Gene Ontologychloroplast stroma2 3 4
GO:0009570
IEA
InterProchloroplast stroma
GO:0009579
IEA
GOA Databasethylakoid
GO:0016020
IEA
GOA Databasemembrane
GO:0009507
IEA
GOA Databasechloroplast
GO:0009507
IDA, HDA
ISM
Gene Ontologychloroplast1 5
GO:0009536
IEA
GOA Databaseplastid
GO:0009535
IEA
GOA Databasechloroplast thylakoid membrane
GO:0009941
IEA
GOA Databasechloroplast envelope
GO:0009941
IDA
IBA
Gene Ontologychloroplast envelope2 3

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036770 Ankyrin repeat-containing domain superfamily
IPR044242 Protein LHCP TRANSLOCATION DEFECT-like
Mapman id Description
23.1.7.1 Protein translocation.chloroplast.thylakoid membrane SRP insertion system.TIC-to-SRP handover factor (LTD)