Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G50900 Arabidopsis thaliana HOM05D005249 ORTHO05D006457 2.9e-91 338.6 176 100.0
AL1G58630 Arabidopsis lyrata HOM05D005249 ORTHO05D006457 1.7e-86 322.8 179 95.0
Carub.0001s3985 Capsella rubella HOM05D005249 ORTHO05D006457 8.2e-86 320.5 178 93.8
AL8G37450 Arabidopsis lyrata HOM05D005249 ORTHO05D006457 1.4e-85 319.7 176 95.5
A05p19870 Brassica napus HOM05D005249 ORTHO05D006457 8.8e-80 300.4 175 88.6
BraA05t20892Z Brassica rapa HOM05D005249 ORTHO05D006457 8.8e-80 300.4 175 88.6
A06p02830 Brassica napus HOM05D005249 ORTHO05D006457 1.5e-79 299.7 177 89.3
BraA06t23490Z Brassica rapa HOM05D005249 ORTHO05D006457 1.5e-79 299.7 177 89.3
BcaC08g43263 Brassica carinata HOM05D005249 ORTHO05D006457 2.0e-79 299.3 176 89.2
C06p06070 Brassica napus HOM05D005249 ORTHO05D006457 2.0e-79 299.3 176 89.2
BolC6t35720H Brassica oleracea HOM05D005249 ORTHO05D006457 2.0e-79 299.3 176 89.2
Thhalv10011819m.g Eutrema salsugineum HOM05D005249 ORTHO05D006457 2.6e-79 298.9 177 88.7
BcaB07g33531 Brassica carinata HOM05D005249 ORTHO05D006457 3.3e-79 298.5 177 88.7
Sp1g37640 Schrenkiella parvula HOM05D005249 ORTHO05D006457 3.3e-79 298.5 178 88.2
C05p33210 Brassica napus HOM05D005249 ORTHO05D006457 2.9e-75 285.4 167 88.0
Aa31LG10G3330 Aethionema arabicum HOM05D005249 ORTHO05D006457 8.0e-73 277.3 172 84.3
BcaB02g11192 Brassica carinata HOM05D005249 ORTHO05D006457 5.4e-69 264.6 180 80.0
A05p28310 Brassica napus HOM05D005249 ORTHO05D006457 2.9e-67 258.8 182 79.7
BraA05t21713Z Brassica rapa HOM05D005249 ORTHO05D006457 2.9e-67 258.8 182 79.7
THA.LOC104798778 Tarenaya hassleriana HOM05D005249 ORTHO05D006457 3.8e-67 258.5 177 76.8
Thhalv10021639m.g Eutrema salsugineum HOM05D005249 ORTHO05D006457 6.5e-67 257.7 177 80.2
Carub.0003s2051 Capsella rubella HOM05D005249 ORTHO05D006457 8.6e-67 257.3 180 77.2
BolC5t33095H Brassica oleracea HOM05D005249 ORTHO05D006457 1.5e-66 256.5 182 78.6
Sp3g18550 Schrenkiella parvula HOM05D005249 ORTHO05D006457 3.2e-66 255.4 178 77.0
C05p43800 Brassica napus HOM05D005249 ORTHO05D006457 1.2e-65 253.4 183 77.0
BcaB07g33530 Brassica carinata HOM05D005249 ORTHO05D006457 2.8e-65 252.3 151 88.1
Cpa.g.sc97.36 Carica papaya HOM05D005249 ORTHO05D006457 1.8e-64 249.6 154 81.2
Ciclev10009689m.g Citrus clementina HOM05D005249 ORTHO05D006457 2.0e-63 246.1 157 78.3
Gohir.A01G077300 Gossypium hirsutum HOM05D005249 ORTHO05D006457 2.2e-62 242.7 148 80.4
Gohir.D05G366500 Gossypium hirsutum HOM05D005249 ORTHO05D006457 2.2e-62 242.7 147 80.3
Manes.03G127000 Manihot esculenta HOM05D005249 ORTHO05D006457 2.2e-62 242.7 170 75.3
Thecc.07G044000 Theobroma cacao HOM05D005249 ORTHO05D006457 2.2e-62 242.7 147 79.6
COL.COLO4_09631 Corchorus olitorius HOM05D005249 ORTHO05D006457 2.8e-62 242.3 157 79.0
TWI38G0945 Tripterygium wilfordii HOM05D005249 ORTHO05D006457 3.7e-62 241.9 154 78.6
Gohir.D01G064800 Gossypium hirsutum HOM05D005249 ORTHO05D006457 4.9e-62 241.5 148 79.7
Gorai.002G085700 Gossypium raimondii HOM05D005249 ORTHO05D006457 4.9e-62 241.5 148 79.7
Eucgr.F03446 Eucalyptus grandis HOM05D005249 ORTHO05D006457 1.4e-61 240.0 153 77.8
RcHm_v2.0_Chr5g0038151 Rosa chinensis HOM05D005249 ORTHO05D006457 1.4e-61 240.0 162 74.1
FvH4_3g22190 Fragaria vesca HOM05D005249 ORTHO05D006457 7.0e-61 237.7 176 70.5
Manes.15G073900 Manihot esculenta HOM05D005249 ORTHO05D006457 9.2e-61 237.3 147 80.3
MD03G1207700 Malus domestica HOM05D005249 ORTHO05D006457 1.2e-60 236.9 164 73.8
Haze_09646 Corylus avellana HOM05D005249 ORTHO05D006457 3.5e-60 235.3 157 74.5
Prupe.4G209000 Prunus persica HOM05D005249 ORTHO05D006457 3.5e-60 235.3 173 69.4
Cfa020386 Carpinus fangiana HOM05D005249 ORTHO05D006457 4.5e-60 235.0 157 74.5
Gohir.A04G019300 Gossypium hirsutum HOM05D005249 ORTHO05D006457 4.5e-60 235.0 164 74.4
Hma1.2p1_1271F.1_g271820 Hydrangea macrophylla HOM05D005249 ORTHO05D006457 1.0e-59 233.8 159 72.3
Hma1.2p1_1609F.1_g293423 Hydrangea macrophylla HOM05D005249 ORTHO05D006457 1.0e-59 233.8 159 72.3
Sabra16G0285800 Salix brachista HOM05D005249 ORTHO05D006457 2.3e-59 232.6 146 79.5
QL08p011891 Quercus lobata HOM05D005249 ORTHO05D006457 3.8e-59 231.9 156 73.1
QL08p012062 Quercus lobata HOM05D005249 ORTHO05D006457 3.8e-59 231.9 156 73.1
Potri.001G420900 Populus trichocarpa HOM05D005249 ORTHO05D006457 6.6e-59 231.1 156 76.3
Aqoxy1G03622 Aquilegia oxysepala HOM05D005249 ORTHO05D006457 8.6e-59 230.7 178 67.4
Lj8A167T50 Lonicera japonica HOM05D005249 ORTHO05D006457 1.1e-58 230.3 171 71.3
GSVIVG01002001001 Vitis vinifera HOM05D005249 ORTHO05D006457 1.5e-58 229.9 163 71.2
Dinv22281 Davidia involucrata HOM05D005249 ORTHO05D006457 4.3e-58 228.4 173 68.2
CSS0021065 Camellia sinensis var. sinensis HOM05D005249 ORTHO05D006457 5.6e-58 228.0 170 68.2
Duzib213G0461 Durio zibethinus HOM05D005249 ORTHO05D006457 5.6e-58 228.0 163 71.2
Migut.M01785 Erythranthe guttata HOM05D005249 ORTHO05D006457 7.3e-58 227.6 130 83.8
CANSAT21G2135 Cannabis sativa HOM05D005249 ORTHO05D006457 1.6e-57 226.5 177 69.5
Medtr3g019320 Medicago truncatula HOM05D005249 ORTHO05D006457 1.6e-57 226.5 168 72.0
PGR031G1044 Punica granatum HOM05D005249 ORTHO05D006457 1.6e-57 226.5 174 72.4
CiPaw.11G187100 Carya illinoinensis HOM05D005249 ORTHO05D006457 2.8e-57 225.7 146 74.7
arahy.Tifrunner.gnm1.ann1.I048YJ Arachis hypogaea HOM05D005249 ORTHO05D006457 4.7e-57 224.9 162 72.2
Phvul.006G038600 Phaseolus vulgaris HOM05D005249 ORTHO05D006457 1.4e-56 223.4 162 69.8
HanXRQChr05g0159111 Helianthus annuus HOM05D005249 ORTHO05D006457 2.3e-56 222.6 178 68.0
Lsat_1_v5_gn_5_5181 Lactuca sativa HOM05D005249 ORTHO05D006457 3.0e-56 222.2 174 66.1
TAR626G0063 Trochodendron aralioides HOM05D005249 ORTHO05D006457 4.0e-56 221.9 176 66.5
arahy.Tifrunner.gnm1.ann1.EK5LIC Arachis hypogaea HOM05D005249 ORTHO05D006457 5.2e-56 221.5 162 71.6
Ca_08298_v3 Cicer arietinum L. HOM05D005249 ORTHO05D006457 5.2e-56 221.5 183 67.8
Glyma.08G312800 Glycine max HOM05D005249 ORTHO05D006457 6.8e-56 221.1 164 70.7
Psat5g216840 Pisum sativum HOM05D005249 ORTHO05D006457 6.8e-56 221.1 152 75.7
Lalb_Chr15g0080371 Lupinus albus HOM05D005249 ORTHO05D006457 1.5e-55 219.9 173 70.5
Oeu042920.1 Olea europaea HOM05D005249 ORTHO05D006457 1.5e-55 219.9 130 79.2
Cc05_g13500 Coffea canephora HOM05D005249 ORTHO05D006457 3.4e-55 218.8 175 66.9
VMungo0540G0590 Vigna mungo HOM05D005249 ORTHO05D006457 9.8e-55 217.2 178 66.9
Atru.chr2.3277 Acer truncatum HOM05D005249 ORTHO05D006457 1.3e-54 216.9 121 86.8
Nitab4.5_0005048g0030 Nicotiana tabacum HOM05D005249 ORTHO05D006457 1.3e-54 216.9 172 69.8
TAR624G0120 Trochodendron aralioides HOM05D005249 ORTHO05D006457 1.3e-54 216.9 176 66.5
Glyma.18G102100 Glycine max HOM05D005249 ORTHO05D006457 2.2e-54 216.1 179 67.6
Gorai.009G425200 Gossypium raimondii HOM05D005249 ORTHO05D006457 2.2e-54 216.1 215 57.7
SGA_v2.0_scaffold258G45797 Striga asiatica HOM05D005249 ORTHO05D006457 4.9e-54 214.9 171 67.3
MSTRG.15162 Avicennia marina HOM05D005249 ORTHO05D006457 6.4e-54 214.5 171 69.6
ATR0752G229 Amborella trichopoda HOM05D005249 ORTHO05D006457 8.3e-54 214.2 157 72.0
ClCG10G005560 Citrullus lanatus HOM05D005249 ORTHO05D006457 8.3e-54 214.2 170 65.9
unitig_578.g16003 Utricularia gibba HOM05D005249 ORTHO05D006457 1.1e-53 213.8 182 63.2
Actinidia05108 Actinidia chinensis HOM05D005249 ORTHO05D006457 1.8e-53 213.0 168 69.6
Peaxi162Scf00387g00046 Petunia axillaris HOM05D005249 ORTHO05D006457 1.8e-53 213.0 176 66.5
Rhsim04G0001800 Rhododendron simsii HOM05D005249 ORTHO05D006457 4.1e-53 211.8 176 66.5
Lj6g0004310 Lotus japonicus HOM05D005249 ORTHO05D006457 7.0e-53 211.1 179 67.0
CsaV3_3G005280 Cucumis sativus L. HOM05D005249 ORTHO05D006457 9.2e-53 210.7 170 65.3
MELO3C025397.2 Cucumis melo HOM05D005249 ORTHO05D006457 1.2e-52 210.3 170 65.9
Actinidia09913 Actinidia chinensis HOM05D005249 ORTHO05D006457 2.7e-52 209.1 180 65.6
Sed0007548 Sechium edule HOM05D005249 ORTHO05D006457 5.9e-52 208.0 172 67.4
Sopen10g002320 Solanum pennellii HOM05D005249 ORTHO05D006457 5.9e-52 208.0 133 75.9
Solyc10g006370.3 Solanum lycopersicum HOM05D005249 ORTHO05D006457 7.8e-52 207.6 156 69.2
ECA246G1486 Erigeron canadensis HOM05D005249 ORTHO05D006457 1.3e-51 206.8 180 66.1
PGSC0003DMG400014394 Solanum tuberosum HOM05D005249 ORTHO05D006457 1.3e-51 206.8 175 64.0
BcaB06g26188 Brassica carinata HOM05D005249 ORTHO05D006457 1.7e-51 206.5 178 69.7
Oeu062605.1 Olea europaea HOM05D005249 ORTHO05D006457 3.0e-51 205.7 192 59.4
PSO210G5271 Papaver somniferum HOM05D005249 ORTHO05D006457 6.6e-51 204.5 184 61.4
AUR62015702 Chenopodium quinoa HOM05D005249 ORTHO05D006457 8.6e-51 204.1 178 66.3
MBI02_g28338_MAGBIO Magnolia biondii HOM05D005249 ORTHO05D006457 1.1e-50 203.8 168 63.1
Sc16g0006280 Simmondsia chinensis HOM05D005249 ORTHO05D006457 1.1e-50 203.8 180 63.3
PSO832G4498 Papaver somniferum HOM05D005249 ORTHO05D006457 1.5e-50 203.4 184 61.4
CAN.G1781.9 Capsicum annuum HOM05D005249 ORTHO05D006457 1.6e-49 199.9 129 75.2
CDE05G2685 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 2.1e-49 199.5 125 74.4
CDE02G4799 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 4.7e-49 198.4 162 64.8
AUR62020502 Chenopodium quinoa HOM05D005249 ORTHO05D006457 6.2e-49 198.0 179 64.2
Ah.06g182920 Amaranthus hybridus HOM05D005249 ORTHO05D006457 2.3e-48 196.1 178 62.4
EL10Ac4g07899 Beta vulgaris HOM05D005249 ORTHO05D006457 2.6e-47 192.6 175 62.3
FAN11G3900 Fragaria x ananassa HOM05D005249 ORTHO05D006340 3.4e-47 192.2 286 43.7
Nn1g07102 Nelumbo nucifera HOM05D005249 ORTHO05D006457 3.4e-47 192.2 180 57.8
Zm00001eb322850 Zea mays HOM05D005249 ORTHO05D006457 9.8e-47 190.7 140 70.7
Dinv40734 Davidia involucrata HOM05D005249 ORTHO05D006457 4.9e-46 188.3 143 68.5
SMO137G0373 Selaginella moellendorffii HOM05D005249 ORTHO05D006457 8.3e-46 187.6 146 63.7
FAN16G3206 Fragaria x ananassa HOM05D005249 ORTHO05D006340 1.9e-45 186.4 286 42.3
HPP92_017607 Vanilla planifolia HOM05D005249 ORTHO05D006457 6.0e-44 181.4 177 59.3
Os07g0520800 Oryza sativa ssp. japonica HOM05D005249 ORTHO05D006457 1.0e-43 180.6 139 68.3
CBR_g12744 Chara braunii HOM05D005249 ORTHO05D006457 1.7e-43 179.9 125 71.2
SEGI_08050 Sequoiadendron giganteum HOM05D005249 ORTHO05D006457 7.3e-42 174.5 120 69.2
CDE05G0273 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 2.1e-41 172.9 172 52.3
CDE11G0574 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 3.6e-41 172.2 174 52.3
CARHR040950 Cardamine hirsuta HOM05D005249 ORTHO05D006457 8.9e-40 167.5 87 96.6
Pp3c5_16520 Physcomitrium patens HOM05D005249 ORTHO05D006457 1.5e-39 166.8 120 66.7
Mapoly0006s0110 Marchantia polymorpha HOM05D005249 ORTHO05D006457 2.0e-39 166.4 129 65.1
Nitab4.5_0001393g0170 Nicotiana tabacum HOM05D005249 ORTHO05D006457 4.4e-39 165.2 182 56.6
CARHR040940 Cardamine hirsuta HOM05D005249 ORTHO05D006457 5.8e-39 164.9 92 95.7
vmacro09735 Vaccinium macrocarpon HOM05D005249 ORTHO05D006457 6.4e-38 161.4 212 50.9
CARHR096310 Cardamine hirsuta HOM05D005249 ORTHO05D006457 2.1e-36 156.4 87 89.7
BcaC05g27384 Brassica carinata HOM05D005249 ORTHO05D006457 2.6e-31 139.4 91 83.5
Cre12.g551950 Chlamydomonas reinhardtii HOM05D005249 ORTHO05D006457 3.4e-31 139.0 126 54.0
Rhsim04G0000700 Rhododendron simsii HOM05D005249 ORTHO05D006457 3.4e-31 139.0 87 75.9
FAN21G3293 Fragaria x ananassa HOM05D005249 ORTHO05D006457 4.1e-29 132.1 82 78.0
Cfa020388 Carpinus fangiana HOM05D005249 ORTHO05D006457 2.3e-27 126.3 82 73.2
PRCOL_00000858 Prasinoderma coloniale HOM05D005249 ORTHO05D006457 2.5e-26 122.9 100 56.0
TPR.G3850 Trifolium pratense HOM05D005249 ORTHO05D006457 7.3e-26 121.3 82 75.6
MCO16G329 Micromonas commoda HOM05D005249 ORTHO05D006457 9.0e-24 114.4 102 53.9
CARHR096330 Cardamine hirsuta HOM05D005249 ORTHO05D006457 2.0e-23 113.2 101 67.3
Glyma.09G102000 Glycine max HOM05D005249 ORTHO05D006457 9.9e-23 110.9 87 66.7
BcaC05g27382 Brassica carinata HOM05D005249 ORTHO05D006457 1.3e-17 94.0 54 85.2
Atru.chr2.3276 Acer truncatum HOM05D005249 ORTHO05D006457 5.3e-16 88.6 54 79.6
Nn1g07101 Nelumbo nucifera HOM05D005249 ORTHO05D006457 1.6e-12 77.0 88 51.1
CBR_g602 Chara braunii HOM05D005249 ORTHO05D006457 1.9e-10 70.1 63 49.2
FvH4_3g22200 Fragaria vesca HOM05D000371 ORTHO05D006340 1.6e-09 67.0 116 43.1
FAN11G2388 Fragaria x ananassa HOM05D000371 ORTHO05D006340 1.6e-09 67.0 116 42.2
Hund02097 Selenicereus undatus HOM05D000420 ORTHO05D000110 1.8e-08 63.5 73 54.8
RcHm_v2.0_Chr5g0038161 Rosa chinensis HOM05D000371 ORTHO05D006340 3.1e-08 62.8 114 41.2
FAN16G2982 Fragaria x ananassa HOM05D000371 ORTHO05D006340 4.0e-08 62.4 116 42.2


User provided reference genes

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