Gene: AT1G50780
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT1G50780
- Transcript Identifier AT1G50780.1
- Gene Type Coding gene
- Location Chr1 : 18821267-18823077 : positive
Gene Family Information
- ID HOM05D010067
- #Genes/#Species 24/9
- Phylogenetic origin
- ID ORTHO05D012286
- #Genes/#Species 23/9
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid AT1G50780.1
- uniprot Q9C6K0
Descriptions
- Description 2Fe-2S ferredoxin-like superfamily protein
- Computational description 2Fe-2S ferredoxin-like superfamily protein; FUNCTIONS IN: electron carrier activity, iron-sulfur cluster binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Ferredoxin (InterPro:IPR001041), 2Fe-2S ferredoxin, iron-sulphur binding site (InterPro:IPR006058), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675); BEST Arabidopsis thaliana protein match is: MADS-box transcription factor family protein (TAIR:AT1G48150.1); Has 115 Blast hits to 115 proteins in 29 species: Archae - 0; Bacteria - 2; Metazoa - 5; Fungi - 9; Plants - 87; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006357 | IBA | Gene Ontology | regulation of transcription by RNA polymerase II | 1 |
| GO:0045944 | ISO | PLAZA Homology (enrichment) | positive regulation of transcription by RNA polymerase II | HOM05D010067 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000978 | IBA | Gene Ontology | RNA polymerase II cis-regulatory region sequence-specific DNA binding | 1 |
| GO:0000981 | IBA | Gene Ontology | DNA-binding transcription factor activity, RNA polymerase II-specific | 1 |
| GO:0051537 | IEA | GOA Database | 2 iron, 2 sulfur cluster binding | |
| GO:0051536 | IEA | GOA Database | iron-sulfur cluster binding | |
| GO:0051536 | IEA | InterPro | iron-sulfur cluster binding | |
| GO:0003677 | ISO | PLAZA Homology (enrichment) | DNA binding | HOM05D010067 |
| GO:0005515 | ISO | PLAZA Tree-based Orthology | protein binding | AT5G27130 |
| GO:0000987 | ISO | PLAZA Homology (enrichment) | cis-regulatory region sequence-specific DNA binding | HOM05D010067 |
| GO:0046983 | ISO | PLAZA Homology (enrichment) | protein dimerization activity | HOM05D010067 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |