Gene: AT1G48980

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G48980
  • Transcript Identifier AT1G48980.3
  • Gene Type Coding gene
  • Location Chr1 : 18118715-18120511 : positive

Gene Family Information

  • ID HOM05D002822
  • #Genes/#Species 246/94
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G48980.3
  • uniprot Q5XVJ1

Descriptions

  • Description 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
  • Computational description 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, LP.02 two leaves visible, LP.12 twelve leaves visible, D bilateral stage; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT2G17970.3); Has 209 Blast hits to 209 proteins in 54 species: Archae - 0; Bacteria - 7; Metazoa - 69; Fungi - 0; Plants - 120; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).
  • Computational description 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, LP.02 two leaves visible, LP.12 twelve leaves visible, D bilateral stage; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT2G17970.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006402
IEA
Gene OntologymRNA catabolic process
GO:0006402
IEA
InterPromRNA catabolic process
GO:0070988
IEA
GOA Databasedemethylation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003729
IEA
Gene OntologymRNA binding
GO:0003729
IEA
InterPromRNA binding
GO:0032451
IEA
Gene Ontologydemethylase activity
GO:0032451
IEA
InterProdemethylase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005739
ISM
Gene Ontologymitochondrion

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR027450 Alpha-ketoglutarate-dependent dioxygenase AlkB-like
IPR037151 Alpha-ketoglutarate-dependent dioxygenase AlkB-like superfamily
IPR044842 RNA demethylase ALKBH9B/ALKBH10B-like
Mapman id Description
16.5.8.3.1 RNA processing.RNA modification.mRNA methylation.N6-methyladenosine demethylation.demethylase (ALKBH9)